View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0949_low_25 (Length: 260)

Name: NF0949_low_25
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0949_low_25
NF0949_low_25
[»] chr8 (2 HSPs)
chr8 (7-231)||(11402055-11402279)
chr8 (119-214)||(11403127-11403222)
[»] chr2 (4 HSPs)
chr2 (114-224)||(42300562-42300672)
chr2 (114-214)||(42913346-42913446)
chr2 (7-81)||(42913497-42913571)
chr2 (7-81)||(42300437-42300511)
[»] chr6 (2 HSPs)
chr6 (7-81)||(29303584-29303658)
chr6 (114-214)||(29303709-29303809)
[»] chr5 (4 HSPs)
chr5 (7-81)||(12529384-12529458)
chr5 (7-81)||(35841564-35841638)
chr5 (114-214)||(12529233-12529333)
chr5 (114-231)||(35841689-35841806)
[»] chr4 (5 HSPs)
chr4 (7-81)||(27730597-27730671)
chr4 (7-81)||(45965851-45965925)
chr4 (114-231)||(27730429-27730546)
chr4 (114-231)||(45965976-45966093)
chr4 (15-81)||(24146599-24146665)
[»] chr1 (3 HSPs)
chr1 (7-81)||(29282638-29282712)
chr1 (7-81)||(49220633-49220707)
chr1 (114-214)||(29282487-29282587)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 11402055 - 11402279
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttcatggaacaatatttttctcccgtta 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11402055 aggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttcatggaacaatatttttctcctgtta 11402154  T
Q  107 caaaatttgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402155 caaaatttgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacga 11402254  T
Q  207 taatggagctccacgatattgatac 231  Q
    |||||||||||||||||||||||||    
T  11402255 taatggagctccacgatattgatac 11402279  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 11403222 - 11403127
Alignment:
Q  119 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggag 214  Q
    |||||||||||| |||||  ||||| ||||||||||||||||| ||||   | ||||| ||| ||  ||| |||||||||||||||||||||||||    
T  11403222 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgataaagtttggtcatgtggtgactacgataatggag 11403127  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 42300562 - 42300672
Alignment:
Q  114 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 213  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||||| |  |||  |||||||  |||||||||||||||||||||| ||||    
T  42300562 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctatgcaccatgccgatgaaatatgatcatgtggtgactacgatattgga 42300661  T
Q  214 gctccacgata 224  Q
    |  ||||||||    
T  42300662 gtcccacgata 42300672  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 42913446 - 42913346
Alignment:
Q  114 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 213  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| ||||    
T  42913446 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattgga 42913347  T
Q  214 g 214  Q
    |    
T  42913346 g 42913346  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 42913571 - 42913497
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||||||| ||| ||||| |||  |||| |||||| ||||||| |||||||||||||||||||| |||||    
T  42913571 aggagtagagaaagctcagaaatcaaagttgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttc 42913497  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 42300437 - 42300511
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||||||| ||  ||||| |||  |||| |||||| ||||||| |||||||||||||||||||| |||||    
T  42300437 aggagtagagaaagcttagaaatcaaagttgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttc 42300511  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 29303584 - 29303658
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| |||||    
T  29303584 aggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttc 29303658  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 29303709 - 29303809
Alignment:
Q  114 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 213  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| ||||    
T  29303709 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattgga 29303808  T
Q  214 g 214  Q
    |    
T  29303809 g 29303809  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 12529458 - 12529384
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| |||||    
T  12529458 aggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttc 12529384  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 35841564 - 35841638
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| |||||    
T  35841564 aggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttc 35841638  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 12529333 - 12529233
Alignment:
Q  114 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 213  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| ||||    
T  12529333 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattgga 12529234  T
Q  214 g 214  Q
    |    
T  12529233 g 12529233  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 35841689 - 35841806
Alignment:
Q  114 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 213  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  ||||||||||||||||| |||| ||||    
T  35841689 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactatgatattgga 35841788  T
Q  214 gctccacgatattgatac 231  Q
    |  ||| |||| ||||||    
T  35841789 gtcccatgatactgatac 35841806  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 27730671 - 27730597
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| |||||    
T  27730671 aggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttc 27730597  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 45965851 - 45965925
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| |||||    
T  45965851 aggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttc 45965925  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 27730546 - 27730429
Alignment:
Q  114 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 213  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| ||||    
T  27730546 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattgga 27730447  T
Q  214 gctccacgatattgatac 231  Q
    |  ||| |||| ||||||    
T  27730446 gtcccatgatactgatac 27730429  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 45965976 - 45966093
Alignment:
Q  114 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 213  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| ||||    
T  45965976 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattgga 45966075  T
Q  214 gctccacgatattgatac 231  Q
    |  ||| ||||| |||||    
T  45966076 gtcccatgatatcgatac 45966093  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 24146599 - 24146665
Alignment:
Q  15 agaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||| ||||| |||  |||| |||||| ||||||| |||||||||||||||||||| |||||    
T  24146599 agaaagctcagaaatcaaagttgcagtctctgcgtagagagtacgaaaggtatgaaatgtctagttc 24146665  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 29282712 - 29282638
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| |||||    
T  29282712 aggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttc 29282638  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 49220707 - 49220633
Alignment:
Q  7 aggagcagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtcaagttc 81  Q
    ||||| ||||||| ||| ||||| ||| ||||| |||||| ||||||| |||||||||||||||||||| |||||    
T  49220707 aggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtccagttc 49220633  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 29282587 - 29282487
Alignment:
Q  114 tgagcgtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatgga 213  Q
    |||| |||||||||||| |||||   |||| ||||||||||||||||| |||| | |  |||  |||||||  |||||||||||||||||||||| ||||    
T  29282587 tgagagtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattgga 29282488  T
Q  214 g 214  Q
    |    
T  29282487 g 29282487  T

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