View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0949_low_26 (Length: 252)
Name: NF0949_low_26
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0949_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34591141 - 34590920
Alignment:
| Q |
1 |
tgcagtccccttaattacttcgaatttaaactaagatccttaaaaccatactacatgacatacactgctagcagttgccatgtactctgccttagtagtg |
100 |
Q |
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| T |
34591141 |
tgcagtccccttaattacttccaatttaaactaagatccttaaaaccatactacatgacatacactgctagcagttgccatgtactctgcctcagtagtg |
34591042 |
T |
|
| Q |
101 |
gaaagagttattataggttgtttcttagatgaccatgcttagcaaattattcatacgatgttggatcttcactggagctgaatacaacaagattatggag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34591041 |
gaaagagttattataggttgtttcttagatgaccatgcttagcaaattattcatatgatgttggatcttcactggagctgaatacaacaagattatggag |
34590942 |
T |
|
| Q |
201 |
agattgtgctttagtagctttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34590941 |
agattgtgctttagtagctttt |
34590920 |
T |
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