View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0949_low_3 (Length: 506)
Name: NF0949_low_3
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0949_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 182 - 453
Target Start/End: Complemental strand, 28670374 - 28670105
Alignment:
| Q |
182 |
atggacacaaatcaagactcgcataaaaacaaacaatcacatcattgctcctacaatggatatacatacacaaaattcacataaacacaactaggggtta |
281 |
Q |
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| T |
28670374 |
atggacacaaatcaaaactcgcataaaaacaaacaatcacatcattgctcctacaatg-atatacatacacaaaattcacataaacacaactaggggtta |
28670276 |
T |
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| Q |
282 |
atatgataccccaaacaagaacactcactttagttgagttcaaagttatcaacactaagagaattgttgagaggtagaggaagtggtgaagttgaaactg |
381 |
Q |
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| T |
28670275 |
atatgataccccaaacaagaacactcactttagttgagttcaaagttatcaacacaaagagaattgttgagaggtagaggaagtggtgaagttgaaactg |
28670176 |
T |
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| Q |
382 |
gtgatatccccttaaaaagccaatatattgcaacaaaaaatccttatcaaataatgaagcacgttgcatgca |
453 |
Q |
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| T |
28670175 |
gtgatatcccctt-aaaagccaatatattgcaacaaaaaatccttatcaaataatgaagcacgttgcatgca |
28670105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 28670512 - 28670373
Alignment:
| Q |
25 |
acatcatcacaatcataattacttgataaaattctatatgttca------aatacaaatcactcaagaagtcatgaatcatgtttgcacaaaattcattc |
118 |
Q |
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| T |
28670512 |
acatcatcacaatcataattacttgataaaattctatatgttcatgttcaaatacaaatcactcaagaagtcatgaatcatgtttgcacaaaattcattc |
28670413 |
T |
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| Q |
119 |
aactattaccaagacatatacacatacatacacatagtat |
158 |
Q |
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| T |
28670412 |
aactattaccaagacatatacacatacatacacatagtat |
28670373 |
T |
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