View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0949_low_30 (Length: 250)
Name: NF0949_low_30
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0949_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11629976 - 11629756
Alignment:
| Q |
1 |
cttcttaacctttactatatctgcaggcaattctgtaacacaagtattcttgagatccagtgtttctagattttgcaactttcctagtacacaatttgga |
100 |
Q |
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| T |
11629976 |
cttcttaaccttcactatatctgtaggcaattctgtaacacaagtattcttgagatccagtgtttctagattttgcaactttcctagtatacaatttgga |
11629877 |
T |
|
| Q |
101 |
atcgttttcacctgtgtgtttcttaagctcagatatgttaaatgatattggtcaacaaccgctgctggaaacttcttcaaaggtgagtcttgataatcta |
200 |
Q |
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| T |
11629876 |
atcgttttcacctgtgtgtttctcaagctcagatatgttaaatgatataggtcaacaactgctttcggaaacttcttcaaaggtgaatcttgataatcta |
11629777 |
T |
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| Q |
201 |
aaacactgaggagtttgaatc |
221 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
11629776 |
aaacattgaggagtttgaatc |
11629756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 11652280 - 11652064
Alignment:
| Q |
5 |
ttaacctttactatatctgcaggcaattctgtaacacaagtattcttgagatccagtgtttctagattttgcaactttcctagtacacaatttggaatcg |
104 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
11652280 |
ttaaccttgactatatctgcaggcaattctgtaacacgagtattcttaagatcaagtgtttctagattttgcaactttcctagtacacattttggaagca |
11652181 |
T |
|
| Q |
105 |
ttttcacctgtgtgtttcttaagctcagatatgttaaatgatattggtcaacaaccgctgctggaaacttcttcaaaggtgagtcttgataatctaaaac |
204 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| |
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| T |
11652180 |
ctttcacctgtgtgtttttcaagctcagatatgttaaatgatataggtcaacaactgcttttggaaactttctcaaaggtgcatcttgataatctaaaac |
11652081 |
T |
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| Q |
205 |
actgaggagtttgaatc |
221 |
Q |
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||||||||||||||||| |
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| T |
11652080 |
actgaggagtttgaatc |
11652064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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