View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0949_low_31 (Length: 241)

Name: NF0949_low_31
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0949_low_31
NF0949_low_31
[»] chr2 (8 HSPs)
chr2 (80-214)||(34660221-34660357)
chr2 (75-180)||(4869616-4869721)
chr2 (86-200)||(1895359-1895475)
chr2 (86-195)||(17282001-17282113)
chr2 (86-200)||(3921541-3921657)
chr2 (89-217)||(1551658-1551788)
chr2 (86-212)||(17375213-17375342)
chr2 (134-204)||(6705603-6705675)
[»] chr8 (4 HSPs)
chr8 (86-201)||(5994580-5994695)
chr8 (86-204)||(10408770-10408890)
chr8 (86-214)||(6443971-6444100)
chr8 (110-204)||(15050051-15050147)
[»] chr5 (11 HSPs)
chr5 (75-180)||(6030377-6030482)
chr5 (86-204)||(27170146-27170266)
chr5 (75-198)||(7271785-7271906)
chr5 (86-180)||(7767062-7767156)
chr5 (86-194)||(18696888-18696998)
chr5 (88-195)||(38958230-38958340)
chr5 (80-214)||(26656712-26656836)
chr5 (80-214)||(26928299-26928423)
chr5 (86-194)||(41355580-41355678)
chr5 (106-204)||(26331067-26331167)
chr5 (110-204)||(40680968-40681064)
[»] chr3 (2 HSPs)
chr3 (75-180)||(18269752-18269857)
chr3 (90-214)||(43275914-43276040)
[»] chr4 (9 HSPs)
chr4 (86-200)||(23054290-23054406)
chr4 (86-200)||(53202214-53202331)
chr4 (86-195)||(47518508-47518619)
chr4 (86-176)||(34227075-34227165)
chr4 (89-154)||(12469342-12469407)
chr4 (86-137)||(6410005-6410056)
chr4 (125-204)||(45873204-45873285)
chr4 (89-137)||(12466698-12466746)
chr4 (137-214)||(24957685-24957764)
[»] chr6 (4 HSPs)
chr6 (86-180)||(20740549-20740643)
chr6 (86-213)||(21881403-21881532)
chr6 (120-204)||(34213492-34213578)
chr6 (86-154)||(30845554-30845622)
[»] chr1 (9 HSPs)
chr1 (75-172)||(615740-615837)
chr1 (86-195)||(26236709-26236820)
chr1 (86-200)||(34654927-34655043)
chr1 (86-132)||(39709055-39709101)
chr1 (110-204)||(15495971-15496067)
chr1 (86-152)||(34117971-34118037)
chr1 (86-170)||(32058657-32058741)
chr1 (86-132)||(11408042-11408088)
chr1 (86-204)||(14351005-14351124)
[»] chr7 (3 HSPs)
chr7 (89-194)||(3302530-3302637)
chr7 (126-214)||(39020266-39020356)
chr7 (145-195)||(21590530-21590582)
[»] scaffold0092 (1 HSPs)
scaffold0092 (102-201)||(23271-23372)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 34660357 - 34660221
Alignment:
Q  80 gtggtgatggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcg 179  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  34660357 gtggtgatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgggtgttttgtggcgaggctcg 34660258  T
Q  180 t--tggtttttggtggtggtgctcgtgatagtttttg 214  Q
    |  ||||||||||||||||| || ||| | |||||||    
T  34660257 tggtggtttttggtggtggttcttgtggtggtttttg 34660221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 4869721 - 4869616
Alignment:
Q  75 cataggtggtgatggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggg 174  Q
    |||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4869721 cataggtggtgatggttttgatggatctttggttgttttggtttgcggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggg 4869622  T
Q  175 gctcgt 180  Q
    ||||||    
T  4869621 gctcgt 4869616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 1895475 - 1895359
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| || ||||  ||||||||||||||||||||||||||||||  |||    
T  1895475 atggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggttttcttggtggtattgattttgggtcttttgtggcggggctcgtggtgg 1895376  T
Q  184 tttttggtggtggtgct 200  Q
    |||||||||||| ||||    
T  1895375 tttttggtggtgatgct 1895359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 17282001 - 17282113
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggttta-tggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tg 182  Q
    |||||||||||||||||||||||||||||||||  |||| |||||||| ||||||| || |||||||||||||||||||||||||||||| |||||  ||    
T  17282001 atggtttcgatggatctttggttgtgttggttttgtggtacttcatggtggttttcttggtggtgctgattttgggtcttttgtggcgggactcgtggtg 17282100  T
Q  183 gtttttggtggtg 195  Q
    |||||||||||||    
T  17282101 gtttttggtggtg 17282113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 3921657 - 3921541
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    ||||||| ||||||| ||||||||||||||||| |||| ||||| || ||||||| || |||||||||||||||||| |||||||||||||||||  |||    
T  3921657 atggttttgatggatgtttggttgtgttggtttgtggtacttcacggtggttttcttggtggtgctgattttgggtcatttgtggcggggctcgtggtgg 3921558  T
Q  184 tttttggtggtggtgct 200  Q
    |||||||||||| ||||    
T  3921557 tttttggtggtgatgct 3921541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 1551658 - 1551788
Alignment:
Q  89 gtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggttt 186  Q
    |||||||||||||||||||||||||||||| |||| |||| ||| ||||||| || | ||||||||||||||||||| ||||||||||||||  ||||||    
T  1551658 gtttcgatggatctttggttgtgttggtttgtggtacttcgtggtggttttcttggtagtgctgattttgggtctttagtggcggggctcgtggtggttt 1551757  T
Q  187 ttggtggtggtgctcgtgatagtttttgatg 217  Q
    | ||||||| |||| ||| | ||||| ||||    
T  1551758 tgggtggtgatgcttgtggtggttttggatg 1551788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 17375342 - 17375213
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    |||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||| |||||||||||| ||| || ||  |||    
T  17375342 atggtttcgatgaatctttggttgtgttggtttgtggtgcttcatgacagttttcatggtggtgctgattttaggtcttttgtggtgggacttgtggtgg 17375243  T
Q  184 -tttttggtggtggtgctcgtgatagtttt 212  Q
     |||||||||||| ||| |||||| |||||    
T  17375242 ttttttggtggtgttgcgcgtgatggtttt 17375213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 6705675 - 6705603
Alignment:
Q  134 ggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtggtgctcgtg 204  Q
    |||||||||| ||||||||||  | |||||||||||| || ||||||  ||||||||||||||| ||||||||    
T  6705675 ggttttcatggtggtgctgatacttggtcttttgtggtggtgctcgtggtggtttttggtggtgatgctcgtg 6705603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 5994695 - 5994580
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgttggtt 185  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||    
T  5994695 atggttttgatggatctttggttgtgttggtttgtggtgcttcatggcggtattcatggtgatgttgattttgggtcttttgtggcggggctcgttggtt 5994596  T
Q  186 tttggtggtggtgctc 201  Q
    ||||||||||||||||    
T  5994595 tttggtggtggtgctc 5994580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 10408890 - 10408770
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctc--gttgg 183  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||| ||||||| ||||||| ||||||||||||||||||  | |||    
T  10408890 atggtttcgatgaatctttggttgtgttggtttgtggtgcttcatggaggttttaatggtggtgctaattttggatcttttgtggcggggctcctggtgg 10408791  T
Q  184 tttttggtggtggtgctcgtg 204  Q
    |||||||||||| ||| ||||    
T  10408790 tttttggtggtgctgcgcgtg 10408770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 6444100 - 6443971
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgttg-gt 184  Q
    |||||||||| | ||||||| |||||||||||| |||| |||| ||| |||||||||| ||| |||||||||||||||||||||| || |||||  | |     
T  6444100 atggtttcgaagaatctttgattgtgttggtttgtggtacttcgtggtggttttcatggtggggctgattttgggtcttttgtggtggtgctcgaagtgg 6444001  T
Q  185 ttttggtggtggtgctcgtgatagtttttg 214  Q
    |||||||||||||||||||| | |||||||    
T  6444000 ttttggtggtggtgctcgtggtggtttttg 6443971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 15050051 - 15050147
Alignment:
Q  110 tgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtggtgctcgtg 204  Q
    ||||||||| ||||||||| ||| |||||  ||| |||||||| |  | |||||||||||| || ||||||  ||||||||||||||| ||||||||    
T  15050051 tgttggtttgtggtgcttcgtggtggtttcaatggtggtgctggtactaggtcttttgtggtggtgctcgtggtggtttttggtggtgatgctcgtg 15050147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 6030377 - 6030482
Alignment:
Q  75 cataggtggtgatggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggg 174  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||    
T  6030377 cataggtggtgatggtttcgatggatctttggttgtgttggtttgtggtgcttcctgacggttttcatggtggtgctgattttgggtcttttgtggcggg 6030476  T
Q  175 gctcgt 180  Q
    ||||||    
T  6030477 gctcgt 6030482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 27170146 - 27170266
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctc--gttgg 183  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||  | |||    
T  27170146 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctaattttgggtcttttgtggcggggctcatggtgg 27170245  T
Q  184 tttttggtggtggtgctcgtg 204  Q
    |||||||||||| ||| ||||    
T  27170246 tttttggtggtgctgcgcgtg 27170266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 75 - 198
Target Start/End: Complemental strand, 7271906 - 7271785
Alignment:
Q  75 cataggtggtgatggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggg 174  Q
    ||||||||||||||    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |    
T  7271906 cataggtggtgatg----cgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgggtgttttgtggcgag 7271811  T
Q  175 gctcgt--tggtttttggtggtggtg 198  Q
    ||||||  ||||||||||||||||||    
T  7271810 gctcgtggtggtttttggtggtggtg 7271785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 7767062 - 7767156
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt 180  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||    
T  7767062 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcgggtttcatggtggtgttgattttgggtcttttgtggcggggctcgt 7767156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 18696998 - 18696888
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    |||| |||| ||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||||| ||||||||| ||||||||||  |||    
T  18696998 atgggttcggtggatctttggttgtgttggtttgtggtgcttcatggcgtttttcatggtgttgctgattttggatcttttgtgacggggctcgtggtgg 18696899  T
Q  184 tttttggtggt 194  Q
     ||||||||||    
T  18696898 attttggtggt 18696888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 38958230 - 38958340
Alignment:
Q  88 ggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtc-ttttgtggcggggctcgt--tggt 184  Q
    ||||||||||||||||||||||||||||||| || | |||||||| ||||||  ||||||||||||||||||||| |||| |||||||||||||  ||||    
T  38958230 ggtttcgatggatctttggttgtgttggtttgtgatacttcatggtggtttttttgatggtgctgattttgggtctttttttggcggggctcgtggtggt 38958329  T
Q  185 ttttggtggtg 195  Q
    |||||||||||    
T  38958330 ttttggtggtg 38958340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 26656836 - 26656712
Alignment:
Q  80 gtggtgatggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcg 179  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||            ||||||||||||||| | |||||||||| ||||||    
T  26656836 gtggtgatggtttcgacggatctttggttgtattggtttatggtgcttcatgg------------tggtgctgattttggttgttttgtggcgaggctcg 26656749  T
Q  180 t--tggtttttggtggtggtgctcgtgatagtttttg 214  Q
    |  |||||||||||||||||||| ||| | |||||||    
T  26656748 tggtggtttttggtggtggtgcttgtggtggtttttg 26656712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 26928423 - 26928299
Alignment:
Q  80 gtggtgatggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcg 179  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||            ||||||||||||||| | |||||||||| ||||||    
T  26928423 gtggtgatggtttcgacggatctttggttgtattggtttatggtgcttcatgg------------tggtgctgattttggttgttttgtggcgaggctcg 26928336  T
Q  180 t--tggtttttggtggtggtgctcgtgatagtttttg 214  Q
    |  |||||||||||||||||||| ||| | |||||||    
T  26928335 tggtggtttttggtggtggtgcttgtggtggtttttg 26928299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 41355580 - 41355678
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||            ||||||||||||||||||||||||||||||||||||  |||    
T  41355580 atggtttcgatggatctttggttgtgttggtttgtggtacttcatgg------------tggtgctgattttgggtcttttgtggcggggctcgtagtgg 41355667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 26331067 - 26331167
Alignment:
Q  106 gttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtggtgctcgt 203  Q
    ||||||||||||| ||||||||| ||| |||||  ||| ||||| |||| ||| ||||||||||| || |  |||  | ||||||||||||| |||||||    
T  26331067 gttgtgttggtttgtggtgcttcgtggtggtttctatggtggtgttgatattgagtcttttgtggtggtgtccgtaatagtttttggtggtgatgctcgt 26331166  T
Q  204 g 204  Q
    |    
T  26331167 g 26331167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 40681064 - 40680968
Alignment:
Q  110 tgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctc--gttggtttttggtggtggtgctcgtg 204  Q
    |||||| || ||||| ||||||| |||||| ||| ||||| ||||  | |||||||||||| || ||||  | ||||||||||||||| ||||||||    
T  40681064 tgttggattgtggtgtttcatggtggtttttatggtggtgttgatacttggtcttttgtggtggtgctcatggtggtttttggtggtgatgctcgtg 40680968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 18269752 - 18269857
Alignment:
Q  75 cataggtggtgatggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggg 174  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||    
T  18269752 cataggtggtgatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgggtcttttgtggtggg 18269851  T
Q  175 gctcgt 180  Q
    ||||||    
T  18269852 gctcgt 18269857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 43276040 - 43275914
Alignment:
Q  90 tttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttt 187  Q
    |||||||| |||||||||||||||||||| |||||||||||| |  |||| ||| ||||||||||||||||||||||||||||| ||||||  |||||||    
T  43276040 tttcgatgaatctttggttgtgttggtttgtggtgcttcatgacaatttttatggtggtgctgattttgggtcttttgtggcggagctcgtggtggtttt 43275941  T
Q  188 tggtggtggtgctcgtgatagtttttg 214  Q
    | ||||||||||| ||| | |||||||    
T  43275940 tagtggtggtgcttgtggtggtttttg 43275914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 23054290 - 23054406
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    |||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||    
T  23054290 atggtttcaatggatctttggttgtgttggttcgtggtgctttatggcggttttcatggtggtgctgattttgggtcttttgtggcggagctcgtgatgg 23054389  T
Q  184 tttttggtggtggtgct 200  Q
    |||||||||||||||||    
T  23054390 tttttggtggtggtgct 23054406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 53202331 - 53202214
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggc-ggggctcgt--tg 182  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||||  ||||||| || ||||| ||||||||||||||||||||| |||||||||  ||    
T  53202331 atggtttcgatggatctttggttgtattggtttgtggtacttcatgatggttttcttggtggtgttgattttgggtcttttgtggcgggggctcgtggtg 53202232  T
Q  183 gtttttggtggtggtgct 200  Q
    ||||||||||||| ||||    
T  53202231 gtttttggtggtgatgct 53202214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 47518508 - 47518619
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    |||||||||||||||||||||||||||| |||| |||| |||||||| ||||||| || || |||||||||||| ||||||||||   |||||||  |||    
T  47518508 atggtttcgatggatctttggttgtgttcgtttgtggtacttcatggtggttttcttggtgttgctgattttggatcttttgtggtaaggctcgtggtgg 47518607  T
Q  184 tttttggtggtg 195  Q
    ||||||||||||    
T  47518608 tttttggtggtg 47518619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 34227075 - 34227165
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggc 176  Q
    |||||||| |||||||||||||||||||||| | |||| |||||||| || |||| || |||||||||||||||||||||||||| |||||    
T  34227075 atggtttcaatggatctttggttgtgttggtctgtggtacttcatggtggctttcttggtggtgctgattttgggtcttttgtggtggggc 34227165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 12469342 - 12469407
Alignment:
Q  89 gtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgat 154  Q
    ||||||||||||| |||||||||||||||| |||| |||||||| ||||  |||| ||||||||||    
T  12469342 gtttcgatggatccttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgat 12469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 6410056 - 6410005
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggtt 137  Q
    |||||||||||| ||||| |||||||||||||| ||||||||||||| ||||    
T  6410056 atggtttcgatgaatcttgggttgtgttggtttgtggtgcttcatggtggtt 6410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 45873285 - 45873204
Alignment:
Q  125 cttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtggtgctcgtg 204  Q
    |||| ||| |||||||||| ||||| | || ||||||||||||||| || | ||||  ||||||||||||||| ||||||||    
T  45873285 cttcctggtggttttcatggtggtgttaatattgggtcttttgtggtggtgttcgtggtggtttttggtggtgatgctcgtg 45873204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 12466698 - 12466746
Alignment:
Q  89 gtttcgatggatctttggttgtgttggtttatggtgcttcatggcggtt 137  Q
    ||||||||||||| |||||| ||||||||| |||| |||||||| ||||    
T  12466698 gtttcgatggatccttggttatgttggtttgtggtccttcatggtggtt 12466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 24957685 - 24957764
Alignment:
Q  137 tttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtggtgctcgtgatagtttttg 214  Q
    ||||||| ||||||||||||||| |||||||||  || ||||||  || ||||||  ||||||||||||| | |||||||    
T  24957685 tttcatggtggtgctgattttggttcttttgtgatggtgctcgtggtgatttttgacggtggtgctcgtggtggtttttg 24957764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 20740643 - 20740549
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt 180  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||    
T  20740643 atggtttcgatggatctttggttgtgttggtttatggtacttcatggtggttttcttggtggtgctgattttgggtctttagtggcggggctcgt 20740549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 21881532 - 21881403
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||| | ||| |||||  |||    
T  21881532 atggtttcgatgaatctttggttatgttggtttgtggtgcttcatggcagttatcatggtggtgctgattttgggtcttttgttgtgggactcgtggtgg 21881433  T
Q  184 tttttggtggtggtgctcgtgatagttttt 213  Q
    ||||||||||||||||| ||| | ||||||    
T  21881432 tttttggtggtggtgcttgtggtggttttt 21881403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 34213492 - 34213578
Alignment:
Q  120 tggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtggtgctcgtg 204  Q
    ||||||||||   ||||||||||| ||||| ||||||||||||||||||||||||||||||  ||| ||||||||||| ||| ||||    
T  34213492 tggtgcttcacaacggttttcatggtggtgttgattttgggtcttttgtggcggggctcgtaatggcttttggtggtgctgcacgtg 34213578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 30845622 - 30845554
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgat 154  Q
    ||||||| |||| || ||||||||||||||||||||||||||| ||| ||||| |||| ||||| ||||    
T  30845622 atggttttgatgaatttttggttgtgttggtttatggtgcttcgtggtggtttccatggtggtgatgat 30845554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 615837 - 615740
Alignment:
Q  75 cataggtggtgatggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcg 172  Q
    |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||    
T  615837 cataggtggtgatggttttgatggatctttggttgtgttagtttgtggtgcttcatgacggttttcatggtggtgctgaatttggctcttttgtggcg 615740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 26236709 - 26236820
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||  |||    
T  26236709 atgggttcgatggatctttggttgcgttggtttgtggtgcttcatggtggttttcatgatggtgctgattttgagtcttttgtggtggtgctcgtggtgg 26236808  T
Q  184 tttttggtggtg 195  Q
    ||||| ||||||    
T  26236809 tttttagtggtg 26236820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 34655043 - 34654927
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    ||||||| |||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||||| | ||||||  | |    
T  34655043 atggttttgatgcatctttgattgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttggatctttggtggcagagctcgtggtag 34654944  T
Q  184 tttttggtggtggtgct 200  Q
    |||||||||||||||||    
T  34654943 tttttggtggtggtgct 34654927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 39709055 - 39709101
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatgg 132  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  39709055 atggttttgatggatctttggttgtgttggtttgtggtgcttcatgg 39709101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 15496067 - 15495971
Alignment:
Q  110 tgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtggtgctcgtg 204  Q
    |||||| || ||||| ||| ||| |||||||||| ||||||||||  | |||||||||||| || ||||||  ||||||||||||||| ||||||||    
T  15496067 tgttggattgtggtgtttcgtggtggttttcatggtggtgctgatacttggtcttttgtggtggtgctcgtggtggtttttggtggtgatgctcgtg 15495971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 34118037 - 34117971
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctg 152  Q
    ||||||||  ||||||||||||||||||| ||| |||||| |||||||  |||||||| ||||||||    
T  34118037 atggtttcagtggatctttggttgtgttgatttgtggtgcctcatggcatttttcatggtggtgctg 34117971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 32058741 - 32058657
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtgg 170  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||| ||| ||||| |  | ||||| ||||  || |||||||||||    
T  32058741 atggtttagatggatttttggctgtgttggtttatggtgcttcgtggtggtttccgcggtggtgatgatactgagtcttttgtgg 32058657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 11408042 - 11408088
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatgg 132  Q
    ||||||||||   |||||||||||||||||||| |||||||||||||    
T  11408042 atggtttcgacaaatctttggttgtgttggtttgtggtgcttcatgg 11408088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 14351005 - 14351124
Alignment:
Q  86 atggtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tgg 183  Q
    ||||||| |||| || ||| ||||||||||||| ||||| ||| ||| |||||||||| ||||| |||| |||| | |||||||| ||  |||||  |||    
T  14351005 atggttttgatgaattttttgttgtgttggtttgtggtggttcgtggtggttttcatg-tggtgttgatattggattttttgtggtggttctcgtggtgg 14351103  T
Q  184 tttttggtggtggtgctcgtg 204  Q
    |||||  ||||| ||||||||    
T  14351104 ttttttatggtgatgctcgtg 14351124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 3302637 - 3302530
Alignment:
Q  89 gtttcgatggatctttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggttt 186  Q
    |||||||||||||||||||||| ||||| | |||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||  ||||||    
T  3302637 gtttcgatggatctttggttgtattggtatgtggtgcttcatgacagttttcatggtggtgttgattttgggtcttttgtggcggggctcgtggtggttt 3302538  T
Q  187 ttggtggt 194  Q
    ||||||||    
T  3302537 ttggtggt 3302530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 39020266 - 39020356
Alignment:
Q  126 ttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtggtgctcgtgatagtttttg 214  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||| ||||| ||  |||||||||||||||||||| ||| | |||||||    
T  39020266 ttcatagcagttttcatggtggtgctgattttgggtcttttgtggctgggcttgtgatggtttttggtggtggtgcttgtggtggtttttg 39020356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 21590530 - 21590582
Alignment:
Q  145 tggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtg 195  Q
    |||||||||| ||||||||||||||| |||||||||  ||||||||| |||||    
T  21590530 tggtgctgatattgggtcttttgtggtggggctcgtggtggtttttgatggtg 21590582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 23372 - 23271
Alignment:
Q  102 tttggttgtgttggtttatggtgcttcatggcggttttcatgatggtgctgattttgggtcttttgtggcggggctcgt--tggtttttggtggtggtgc 199  Q
    ||||||| |||| |||| ||||||||  ||| ||||| |||| ||||||||||  | |||||||||||| || ||||||  ||||||||||| ||| |||    
T  23372 tttggttatgttcgtttgtggtgctttgtggtggtttccatggtggtgctgatactaggtcttttgtggtggtgctcgtggtggtttttggttgtgatgc 23273  T
Q  200 tc 201  Q
    ||    
T  23272 tc 23271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University