View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0949_low_5 (Length: 417)
Name: NF0949_low_5
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0949_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 407
Target Start/End: Original strand, 35820987 - 35821366
Alignment:
| Q |
29 |
attgataacgaaatttcacagatggaatctcttgagctggatgaaccttcttctacaaggnnnnnnntggtggaaggagagcatatttatggtgtggtgc |
128 |
Q |
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| T |
35820987 |
attgataacgaaatttcacagatggaatctcttgagctggatgaaccttcttctacaaggaaaaaaatggtggaaggagagcatatttatggtgtggtgc |
35821086 |
T |
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| Q |
129 |
acggcagaagacaattttcttactaagaaaaatgtatattagggtattctttgcgttaatcatttgatttttaagggaaacatgtctaataatccaaaat |
228 |
Q |
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| T |
35821087 |
acggcagaagacaattttcttactaagaaaaatatatattagggtattctttgcgttaatcattcagtttttaagggaaacaggtctaataatccaaaat |
35821186 |
T |
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| Q |
229 |
taggcaggaagataaacaaaatccaaccaaaaattaatgtttttagggtattgattaaacaattacaatgtgtttgttaatttatttgacttattttttc |
328 |
Q |
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| T |
35821187 |
taggcaggaagataaacaaaatccaactaaaaattaatgtttttagggtattgattaaacaattacaatgtgtttgttaatttatttgacttattttttc |
35821286 |
T |
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| Q |
329 |
aaccaaactttta-tttaatatttcttaaacaatatccttaaaacaactattatcgtaaacgtgttttaccacacctatg |
407 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
35821287 |
aaccaaacttttattttaatatttcttaaacaatatccttaaaacaactgttatcgtaaaagtgttttaccacacctatg |
35821366 |
T |
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