View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0949_low_6 (Length: 410)
Name: NF0949_low_6
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0949_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 8541434 - 8541066
Alignment:
| Q |
16 |
atcccttatcttctataaataccg--accatctttcattcttctcattcaaaacatatctaccaagtattattactcatttccaactttcttttacctct |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8541434 |
atcccttatcttctataaataccgcgaccatctttcattcttctcattcaaaacatatctaccaagtattattactcatttccaactttcttttacctct |
8541335 |
T |
|
| Q |
114 |
cctagctttaaacacaaaaaatgaagttcatcaataccctttttcttctggccttgctaatggttttggccattacactatcatcagcaacatcttccga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8541334 |
cctagctttaaacacaaaaaatgaagttcatcaataccctttttcttctggccttgctaatggttttggccattacactatcatcagcaacatcttcctt |
8541235 |
T |
|
| Q |
214 |
aaacgttgaaccaaactcttctcttcaaggaacaagctacttccttaaccgaaaacaaaatagaatatctatgtcatgtgacaaatacccaaagatttgt |
313 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8541234 |
aaacgatgaaccaaactcttctcttcaaggaacaagctacttccttaaccgaaaacaaaatagaatatctatgtcctgtgacaaatacccaaagatttgt |
8541135 |
T |
|
| Q |
314 |
tatattaaaggtagcgcaggtcctgattgctgcaataacaaatgtgtcaactttaccatagacatgttt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8541134 |
tatattaaaggtagcgcaggtcctgattgctgcaagaacaaatgtgtcaactttaccatagacatgttt |
8541066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 8551931 - 8551562
Alignment:
| Q |
16 |
atcccttatcttctataaataccgaccatctttcattcttctcattcaaaacatatcta----ccaagta-ttattactcatttccaactttcttttacc |
110 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||||||| ||| |
|
|
| T |
8551931 |
atcccttcccttctataaatatcgaccatctttcattcttctcattcaaaacatatatatccaccaagaaattattactcatttccaactttctttcacc |
8551832 |
T |
|
| Q |
111 |
tctcctagctttaaacacaaaaaatgaagttcatcaataccctttttcttctggccttgctaatggttttggccattacactatcatcagcaacatcttc |
210 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8551831 |
tctcctatctttaatcacaaaa--tgaagttcatcaataccctttttcttctggccttgctaatggctttggccattacactatcatcagcaacatcttc |
8551734 |
T |
|
| Q |
211 |
cgaaaacgttgaaccaaactcttctcttcaaggaacaagctacttccttaaccgaaaacaaaatagaatatctatgtcatgtgacaaatacccaaagatt |
310 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| ||||||| ||||| |||||| ||||||| ||| | ||||||||||||| || |||||| |
|
|
| T |
8551733 |
cgaaaacgaagaaccaaactcttcacttcaaggaacaagccacttcctcaaccgcaaacaatatagaatctctctcacatgtgacaaatatcccaagatt |
8551634 |
T |
|
| Q |
311 |
tgttatattaaaggtagcgcaggtcctgattgctgcaataacaaatgtgtcaactttaccatagacatgttt |
382 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
8551633 |
tgccataccaaaggtagcgcaggtcctgattgttgcaacaacaaatgtgtcaattttaccatagacatgttt |
8551562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 24 - 382
Target Start/End: Complemental strand, 43246748 - 43246378
Alignment:
| Q |
24 |
tcttctataaataccgaccatct-ttc--attcttctcattcaaaacatatctaccaagtatta---ttactcatttccaactttcttttacctctccta |
117 |
Q |
| |
|
||||||||||||||| ||||| | ||| || |||||||||||||||||||| | |||||| || |||||||| ||||||||| ||||||||||| || |
|
|
| T |
43246748 |
tcttctataaatacctaccatttcttcttatccttctcattcaaaacatatccaacaagtactacttttactcatatccaactttgttttacctctcata |
43246649 |
T |
|
| Q |
118 |
----gctttaaacacaaaaa--atgaagttcatcaataccctttttcttctggccttgctaatggttttggcc---attacactatcatcagcaacatct |
208 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| ||| || |||||||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
43246648 |
catagctttaaacacaaaaacaatgaagttcatcaagacccttttccttgtgaccttgctaatggctttgggcgctattacactatcatcagcaacatct |
43246549 |
T |
|
| Q |
209 |
tccgaaaacgttgaaccaaactcttctcttcaaggaacaagctacttccttaaccgaaaacaaaatagaatatctatgtcatgtgacaaatacccaaaga |
308 |
Q |
| |
|
|| |||||| |||||||||||| || |||||||||||| |||||||| ||| |||||||| ||||| ||| |||||||| ||||||| ||||||| |
|
|
| T |
43246548 |
tctaaaaacgaagaaccaaactct---ctccaaggaacaagccacttcctttcccggaaacaaaacagaatctctgtgtcatgtaacaaatatccaaaga |
43246452 |
T |
|
| Q |
309 |
tttgttatattaaaggtagcgcaggtcctgattgctgcaataacaaatgtgtcaactttaccatagacatgttt |
382 |
Q |
| |
|
|||| |||| |||||||| |||| ||| |||||||||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
43246451 |
tttgcaatatcaaaggtagtccaggccctaattgctgcaacaacaattgtgtcaacttttccatagacatgttt |
43246378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 173 - 382
Target Start/End: Complemental strand, 8533005 - 8532796
Alignment:
| Q |
173 |
atggttttggccattacactatcatcagcaacatcttccgaaaacgttgaaccaaactcttctcttcaaggaacaagctacttccttaaccgaaaacaaa |
272 |
Q |
| |
|
|||| |||| || |||||| |||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
8533005 |
atggctttgaccgttacaccatcatcagcatcatcttctgaaaacgaagaaccaaactcttcacttcaaggaacaagccacttcctcaaccgcaaacaat |
8532906 |
T |
|
| Q |
273 |
atagaatatctatgtcatgtgacaaatacccaaagatttgttatattaaaggtagcgcaggtcctgattgctgcaataacaaatgtgtcaactttaccat |
372 |
Q |
| |
|
||||||| ||| | ||||||||||||| || |||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
8532905 |
atagaatctctctcacatgtgacaaatatcccaagatttgccataccaaaggtagcgcaggtcctgattgttgcaacaacaaatgtgtcaattttaccat |
8532806 |
T |
|
| Q |
373 |
agacatgttt |
382 |
Q |
| |
|
|||||||||| |
|
|
| T |
8532805 |
agacatgttt |
8532796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University