View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0949_low_7 (Length: 377)
Name: NF0949_low_7
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0949_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 363
Target Start/End: Complemental strand, 35351093 - 35350759
Alignment:
| Q |
29 |
actttctatgtggttaacgtgattccaatatattgttaaagaatatacattgtttcaaaactcattaataacttcattaaccacaattgtcaagtgttta |
128 |
Q |
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| T |
35351093 |
actttctatgtggttaacgtgattccaatatattgttaaagaatatacattgtttcgaaactcattaataacttcattaaccacaattgtcaagtgttta |
35350994 |
T |
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| Q |
129 |
actacatgtagatttgaacacctgaaaatttgtggttgatcgcctccaaatttgtggttaataaaaggattaactatgattttagtccctccaattatag |
228 |
Q |
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| T |
35350993 |
actacatgtagatttgaacacctgaaaatttgtggttgatcgcctccaaatttgtggttaataaaaggattaactatgattttagtccctccaattatag |
35350894 |
T |
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| Q |
229 |
agnnnnnnnnnnnnnnnnnnnagtccctataactttttctgtttagattcacgcctgcaagttaaaaaattgttacttttagtccttgatggcatgcata |
328 |
Q |
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| T |
35350893 |
agttttttggttttactttttagtccatataactttttctgtttagattcacgcctgcaagttaaaaaattgttacttttagtccttgacagcatacata |
35350794 |
T |
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| Q |
329 |
gctcaataaaatcatgccacattgcccaatatgtt |
363 |
Q |
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| T |
35350793 |
gctcaataaaatcatgccacattgcccaatatgtt |
35350759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 2932260 - 2932222
Alignment:
| Q |
118 |
tcaagtgtttaactacatgtagatttgaacacctgaaaa |
156 |
Q |
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| T |
2932260 |
tcaagtgttcaaatacatgtagatttgaacacctgaaaa |
2932222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 27670343 - 27670283
Alignment:
| Q |
122 |
gtgtttaactacatgtagatttgaacacctgaaaatttgtggttgatcgcctccaaatttgt |
183 |
Q |
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| T |
27670343 |
gtgttcaactacatgtagatttgaacacatgaaaattt-tagttaatcgcgtccaaatttgt |
27670283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 29136927 - 29136839
Alignment:
| Q |
105 |
ttaaccacaattgtcaagtgtttaactacatgtagatttgaacacctgaaaatttgtggttgatcgcctccaaatttgtggttaataaaa |
194 |
Q |
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| T |
29136927 |
ttaaccataattttcagatgttcaactacatgtagatttgaacaccttcaaa-ttgtggttaatcacatataaatttgtggttaaaaaaa |
29136839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 27891395 - 27891328
Alignment:
| Q |
122 |
gtgtttaactacatgtagatttgaacacctgaaaatttgtggttgatcgcctccaaatttgtggttaat |
190 |
Q |
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| T |
27891395 |
gtgttcaactacatgtagatttaaacacctcaaaa-ttggggttaatcacgtccaagtttgtggttaat |
27891328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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