View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0949_low_8 (Length: 377)

Name: NF0949_low_8
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0949_low_8
NF0949_low_8
[»] chr1 (4 HSPs)
chr1 (140-348)||(15593484-15593691)
chr1 (76-132)||(15593324-15593380)
chr1 (12-55)||(15593256-15593299)
chr1 (243-320)||(861889-861966)
[»] chr7 (3 HSPs)
chr7 (282-324)||(42720925-42720967)
chr7 (270-313)||(9483377-9483420)
chr7 (255-317)||(31924415-31924477)
[»] chr8 (2 HSPs)
chr8 (259-319)||(32145224-32145284)
chr8 (280-324)||(25831682-25831726)
[»] chr4 (2 HSPs)
chr4 (282-320)||(5096131-5096169)
chr4 (256-321)||(43093534-43093599)
[»] chr2 (1 HSPs)
chr2 (282-320)||(12940970-12941008)
[»] chr3 (3 HSPs)
chr3 (244-313)||(26656716-26656785)
chr3 (234-315)||(51733135-51733216)
chr3 (234-298)||(49636813-49636877)
[»] chr6 (1 HSPs)
chr6 (248-324)||(10038445-10038520)
[»] chr5 (1 HSPs)
chr5 (254-306)||(9895147-9895199)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 140 - 348
Target Start/End: Original strand, 15593484 - 15593691
Alignment:
Q  140 tgctagtatattgggatttacaggctttgtagttgcttgaattggaaacttatagtctgccgcattgataggaaagttgattaatcaagacctatgtagc 239  Q
    ||||||||  |||| ||||||||||||||||||| |||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  15593484 tgctagtaagttggaatttacaggctttgtagttacttgaattggaa-cttatagtctcccacattgataggaaagttgatgaatcaagacctatgtagc 15593582  T
Q  240 actgacacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtcatgtaggtgttcaagttca 339  Q
    ||||||||||||||||| |||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| |  |||| |||||    
T  15593583 actgacacgacacaaacgcatgtgactatgttcgattaatctattttttcaaattattagtggtgtcaatgtgtcaatgtcatgtaagcattcacgttca 15593682  T
Q  340 agctttata 348  Q
    |||||||||    
T  15593683 agctttata 15593691  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 15593324 - 15593380
Alignment:
Q  76 ccctaatagaggaaaccaggatgagtgatggcaagtgacaacacttcattcttgctc 132  Q
    |||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  15593324 ccctgatagaggaaaccacggtgagtgattgcaagtgacaacacttcattcttgctc 15593380  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 15593256 - 15593299
Alignment:
Q  12 atgaagtggaatggaactgatgaggatggtgtggtggcttgttc 55  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  15593256 atgaagtggaatggaactaacgaggatggtgtggtggcttgttc 15593299  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 861889 - 861966
Alignment:
Q  243 gacacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtc 320  Q
    |||||||| | | |||| |||||||| ||||||| |   ||||||||||||||||| | ||||||||||||| |||||    
T  861889 gacacgaccccatcacacgtgactactttcaattttgtcattttttcaaattattactagtgtcaacgtgtctatgtc 861966  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 42720925 - 42720967
Alignment:
Q  282 attttttcaaattattagtggtgtcaacgtgtcaatgtcatgt 324  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  42720925 attttttcaaattattagcggtgtcaacgtgtcagtgtcatgt 42720967  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 9483420 - 9483377
Alignment:
Q  270 ttcaattattctattttttcaaattattagtggtgtcaacgtgt 313  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||    
T  9483420 ttcaattattctattttctcaaattattattggtgtcaatgtgt 9483377  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 31924477 - 31924415
Alignment:
Q  255 acacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaat 317  Q
    |||||||||| ||  ||||||| ||||||||| | |||||||||  |||||||||||||||||    
T  31924477 acacatgtgattatattcaattgttctattttcttaaattattatcggtgtcaacgtgtcaat 31924415  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 32145284 - 32145224
Alignment:
Q  259 atgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgt 319  Q
    |||||| |||||| |||||||| ||||| ||||||||||| |||||| || ||||||||||    
T  32145284 atgtgattacgtttaattattccattttctcaaattattactggtgttaaagtgtcaatgt 32145224  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 25831682 - 25831726
Alignment:
Q  280 ctattttttcaaattattagtggtgtcaacgtgtcaatgtcatgt 324  Q
    ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  25831682 ctattttcttaaattattagtggtgtctacgtgtcaatgttatgt 25831726  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 5096131 - 5096169
Alignment:
Q  282 attttttcaaattattagtggtgtcaacgtgtcaatgtc 320  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  5096131 attttttcaaattattagcggtgtcgacgtgtcaatgtc 5096169  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 43093534 - 43093599
Alignment:
Q  256 cacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtca 321  Q
    ||||||||| ||| ||||||||| | |||||||||||||||||  |||||  |||||||| |||||    
T  43093534 cacatgtgattacattcaattatgccattttttcaaattattatgggtgttgacgtgtcagtgtca 43093599  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 12940970 - 12941008
Alignment:
Q  282 attttttcaaattattagtggtgtcaacgtgtcaatgtc 320  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  12940970 attttttcaaattattagttgtgtcaacgtgtcagtgtc 12941008  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 26656716 - 26656785
Alignment:
Q  244 acacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgt 313  Q
    |||| |||||||||||||||  ||| || ||||||| ||||||| ||||||| || || |||||||||||    
T  26656716 acacaacacaaacacatgtggttacattgaattattttatttttccaaattactactgttgtcaacgtgt 26656785  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 51733216 - 51733135
Alignment:
Q  234 tgtagcactgacacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtca 315  Q
    |||||||| ||||| ||||  |||||| ||   |||||||||||||||||||| |||| ||||||  ||||||||| |||||    
T  51733216 tgtagcaccgacacaacaccgacacatctggtaacgttcaattattctattttctcaagttattatcggtgtcaacctgtca 51733135  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 49636813 - 49636877
Alignment:
Q  234 tgtagcactgacacgacacaaacacatgtgactacgttcaattattctattttttcaaattatta 298  Q
    ||||||||||||||||||| | | ||||||| ||| |||||||| |  ||||| |||||||||||    
T  49636813 tgtagcactgacacgacaccagcgcatgtgattacattcaattaattcattttctcaaattatta 49636877  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 10038445 - 10038520
Alignment:
Q  248 gacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtcatgt 324  Q
    ||||| ||||||||||| ||  ||||||||||||||||| || |  |||||  ||||| ||||||||||||||||||    
T  10038445 gacaccaacacatgtgattatattcaattattctattttctc-aggtattaccggtgttaacgtgtcaatgtcatgt 10038520  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 9895199 - 9895147
Alignment:
Q  254 aacacatgtgactacgttcaattattctattttttcaaattattagtggtgtc 306  Q
    ||||||||||| ||||||||| || | |||||| ||||||||||| |||||||    
T  9895199 aacacatgtgattacgttcaaataatttattttctcaaattattactggtgtc 9895147  T

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