View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0950_high_1 (Length: 577)
Name: NF0950_high_1
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_high_1 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 16 - 491
Target Start/End: Original strand, 8294819 - 8295294
Alignment:
| Q |
16 |
atcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8294819 |
atcataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccat |
8294918 |
T |
|
| Q |
116 |
caaacaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcacagataaacgggtcgggaagctctttgatatggagagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8294919 |
caaacaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcacagataaacgggtcgggaagctctttgatatggagagg |
8295018 |
T |
|
| Q |
216 |
aatagaaaaaccaggaatatttactgtttcataacttgattctaagaactgagttgatgcagcttcatcaaggtttggaatagtgagaaataaagagaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8295019 |
aatagaaaaaccaggaatatttactgtttcataacttgatcctaagaactgagttgatgcagcttcatcaaggtttggaatagtgagaaataaagagaat |
8295118 |
T |
|
| Q |
316 |
aaaacagctccagaggaaaagaaaaggtatgataaaaggttgaaatgtttagcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaacta |
415 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8295119 |
aaaacagctcctgaggaaaagaaaaggtatgataaaaggttgaaatgtttcgcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaacta |
8295218 |
T |
|
| Q |
416 |
ggcgagtttttgaaaggagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcatctg |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8295219 |
ggcgagtttttgaaaggagtgattttacttcttcataaagaaatggaatagagtgtttcactatgagtttcatctg |
8295294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 488
Target Start/End: Complemental strand, 33256933 - 33256464
Alignment:
| Q |
19 |
ataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaa |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||| ||||||| | ||||| ||||||||| | |||||||||| || ||||||||||||| |
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|
| T |
33256933 |
ataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactgaaagtattgattataacaccatcaa |
33256834 |
T |
|
| Q |
119 |
acaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcacagataaacgggtcgggaagctctttgatatggagaggaat |
218 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||| |||||| |
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|
| T |
33256833 |
acaatgacgatttttgacacacatcaaggattgatttgtaggtatcacttgatctttcacagttaaacgggtctggaagctctttgacatggaaaggaat |
33256734 |
T |
|
| Q |
219 |
agaaaaaccaggaatatttactgtttcataacttgattctaagaactgagttgatgcagcttcatcaaggtttggaatagtgagaaataaagagaataaa |
318 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| ||||||||||||| |||||||| ||||| |||||||||| ||||||||| |||||||||||| |
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|
| T |
33256733 |
agaaaaaccaggaacatttaccatttcataacttgatcctaagaactgagtagatgcagcatcatcgaggtttggaagagtgagaaagaaagagaataaa |
33256634 |
T |
|
| Q |
319 |
acagctccagaggaaaagaaaaggtatgataaaaggttgaaatgtttagcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactaggc |
418 |
Q |
| |
|
|||||||| || |||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
33256633 |
acagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaaggt |
33256534 |
T |
|
| Q |
419 |
gagtttttgaaaggagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcat |
488 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33256533 |
tagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcat |
33256464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 488
Target Start/End: Complemental strand, 1051 - 582
Alignment:
| Q |
19 |
ataggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaa |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||| ||||||| | ||||| ||||||||| | |||||||||| || ||||||||||||| |
|
|
| T |
1051 |
ataggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactgaaagtattgattataacaccatcaa |
952 |
T |
|
| Q |
119 |
acaatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcacagataaacgggtcgggaagctctttgatatggagaggaat |
218 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
951 |
acaatgacgatttttgacacacatcaaggattgatttgtaggtatcacttgatctttcacagttaaacgggtctggaagctctttgacatggaaaggaat |
852 |
T |
|
| Q |
219 |
agaaaaaccaggaatatttactgtttcataacttgattctaagaactgagttgatgcagcttcatcaaggtttggaatagtgagaaataaagagaataaa |
318 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| ||||||||||||| |||||||| ||||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
851 |
agaaaaaccaggaacatttaccatttcataacttgatcctaagaactgagtagatgcagcatcatcgaggtttggaagagtgagaaagaaagagaataaa |
752 |
T |
|
| Q |
319 |
acagctccagaggaaaagaaaaggtatgataaaaggttgaaatgtttagcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactaggc |
418 |
Q |
| |
|
|||||||| || |||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
751 |
acagctcctgaagaaaagaaaaggtaagacaaaaggttgaaatgtttagctacatcgtgtgcatcggttgaaaacatgctgcaaactaaagcaacaaggt |
652 |
T |
|
| Q |
419 |
gagtttttgaaaggagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcat |
488 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
651 |
tagtttttgaaagaagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcat |
582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 185 - 344
Target Start/End: Original strand, 46720649 - 46720808
Alignment:
| Q |
185 |
acgggtcgggaagctctttgatatggagaggaatagaaaaaccaggaatatttactgtttcataacttgattctaagaactgagttgatgcagcttcatc |
284 |
Q |
| |
|
||||||| | ||| ||||||| ||||| ||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
46720649 |
acgggtctgaaagatctttgacatggaatggaatagaaaaactaggaacatttactgtttcataatttgattcgaagaactgagttgaagcaacttcatc |
46720748 |
T |
|
| Q |
285 |
aaggtttggaatagtgagaaataaagagaataaaacagctccagaggaaaagaaaaggta |
344 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
46720749 |
aaggtttggaatagtgagaaacaaagagaataaaacagctactgaggacaagaaaaggta |
46720808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 46720520 - 46720614
Alignment:
| Q |
47 |
tctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaacaatgataatttttgacacaca |
141 |
Q |
| |
|
||||||| ||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46720520 |
tctctctctctctaagtacccttatggcttccagttccaaatcagtgaaagtattcataataacaccatcaaacaatgataattttggacacaca |
46720614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 894876 - 895033
Alignment:
| Q |
22 |
ggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaaca |
121 |
Q |
| |
|
||||| || ||||||| || |||||||||| | |||||||||| ||||||||| || |||||||||||| ||||||| || || ||||||||||||| | |
|
|
| T |
894876 |
ggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaacta |
894975 |
T |
|
| Q |
122 |
atgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcaca |
179 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
894976 |
atgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcaca |
895033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 488
Target Start/End: Original strand, 895178 - 895348
Alignment:
| Q |
318 |
aacagctccagaggaaaagaaaaggtatgataaaaggttgaaatgtttagcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactagg |
417 |
Q |
| |
|
||||||||| |||| | |||||||||| || | | ||| || ||||| ||||| |||| |||||| |||||||| || ||||| | ||||| ||| ||| |
|
|
| T |
895178 |
aacagctcctgaggcatagaaaaggtaagaagacaagttaaattgtttggcaacttcatatgcatctgttgaaaatatactgaagattaaagaaacaagg |
895277 |
T |
|
| Q |
418 |
cgagtttttgaaaggagtgattttacttcttcatgaagaaatggaatagagtgtttcactatgagtttcat |
488 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
895278 |
ttagttttggaaatgagtgatttaacttcttgttgaagaaatggaatagaatgtttcacaatgagtttcat |
895348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 355 - 488
Target Start/End: Complemental strand, 905428 - 905295
Alignment:
| Q |
355 |
ttgaaatgtttagcaacatcatgtgcatcggttgaaaacatgctgaaaactaaagcaactaggcgagtttttgaaaggagtgattttacttcttcatgaa |
454 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| || | | || | ||||| ||| ||| |||||| |||| |||||||||||||||||| || | |
|
|
| T |
905428 |
ttgaattgtttagcaacttcatgtgcatcggttgagaatagaccaaagattaaagaaacaaggttagttttggaaatgagtgattttacttcttcttgta |
905329 |
T |
|
| Q |
455 |
gaaatggaatagagtgtttcactatgagtttcat |
488 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| |
|
|
| T |
905328 |
gaaatggaatagaatgtttcacaatgagtttcat |
905295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 905767 - 905641
Alignment:
| Q |
22 |
ggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaaca |
121 |
Q |
| |
|
||||| || |||||||||| |||||||||| | ||||||||||||||||| || || || ||||||||||||||||| | || |||| |||||||| | |
|
|
| T |
905767 |
ggtcccactggataaacacaaggtttctctttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaacta |
905668 |
T |
|
| Q |
122 |
atgataatttttgacacacatcaagaa |
148 |
Q |
| |
|
||| | ||||||||| || ||||||| |
|
|
| T |
905667 |
atgtgagtttttgacaaacttcaagaa |
905641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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