View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_high_20 (Length: 231)
Name: NF0950_high_20
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 38711182 - 38710959
Alignment:
| Q |
1 |
cttggaaggctccttctccaagtgctaccagcaagactgctccaactcaatctccgacttggaatgctcctgcaccaagtgctaccggctggactgctcc |
100 |
Q |
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| T |
38711182 |
cttggaaggctccttcaccaagtgctaccagcaagactgctccaacacaatcaccggtttggaatgctccttcaccaagtgctaccggctggactgctcc |
38711083 |
T |
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| Q |
101 |
cgcaca------------atcaccgacttggagtgcttcttcaccaagtgccaccggttggactactccggcacactctccaacacaatcaccggcttgg |
188 |
Q |
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| T |
38711082 |
cgcacactccccaacacaatcaccgacttggagtgcttcttcaccaagtgctaccggttggactactccgacacactctccaacacaatcaccggcttgg |
38710983 |
T |
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| Q |
189 |
catgctccttcaccaagtgctacc |
212 |
Q |
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| T |
38710982 |
catgctccttcaccaagtgctacc |
38710959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 38710999 - 38710890
Alignment:
| Q |
103 |
cacaatcaccgacttggagtgcttcttcaccaagtgccaccggttggactactccggcacactctccaacacaatcaccggcttggcatgctccttcacc |
202 |
Q |
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| T |
38710999 |
cacaatcaccggcttggcatgctccttcaccaagtgctaccggttggactgctcctgcacattctccaacaaaatcatcgggttggaatgctccgacacc |
38710900 |
T |
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| Q |
203 |
aagtgctacc |
212 |
Q |
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| T |
38710899 |
aagtgctacc |
38710890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 38711249 - 38711154
Alignment:
| Q |
117 |
tggagtgcttcttcaccaagtgccaccggttggactactccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctacc |
212 |
Q |
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| T |
38711249 |
tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcaccaagtgctacc |
38711154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 38711005 - 38710939
Alignment:
| Q |
40 |
ctccaactcaatctccgacttggaatgctcctgcaccaagtgctaccggctggactgctcccgcaca |
106 |
Q |
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| T |
38711005 |
ctccaacacaatcaccggcttggcatgctccttcaccaagtgctaccggttggactgctcctgcaca |
38710939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 38710903 - 38710827
Alignment:
| Q |
130 |
caccaagtgccaccggttggactactccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagt |
206 |
Q |
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| T |
38710903 |
caccaagtgctaccggttggactgcccctacacattctccagcacaatcatcagcttggaatgctccgacaccaagt |
38710827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 39704825 - 39704878
Alignment:
| Q |
154 |
ctccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagtg |
207 |
Q |
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| T |
39704825 |
ctccggcacgctccccaacacaaccaccggcttggaatgctccctcatcaagtg |
39704878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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