View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_high_23 (Length: 211)
Name: NF0950_high_23
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 1522839 - 1522654
Alignment:
| Q |
1 |
tcaactgtagccttcctaatgattttaatatatttgatatagattttgaagaagcaaactctgtaatgttcgtatttttcaaaacatccgaaatctgttc |
100 |
Q |
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| T |
1522839 |
tcaactgtagccttcctaatgattttaatatatttgatatagattttgaag---caaactctgtaatgtttgtatttttcgaaacatccgaaatctgttc |
1522743 |
T |
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| Q |
101 |
cttgcgatcactttcacaaagagccaaaaagtagttttctgcaataagattgaatacaaataagttttcattagaattttgttgatgtt |
189 |
Q |
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| T |
1522742 |
cttgcgatcactttcacaaagagccaaaaagtagttttctgcaacaagattgaatacaaataagttttcattaaaattttgttgatgtt |
1522654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 8493554 - 8493717
Alignment:
| Q |
1 |
tcaactgtagccttcctaatgattttaatatatttgatatagattt----tgaagaagcaaactctgtaatgttcgtatttttcaaaacatccgaaatct |
96 |
Q |
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| T |
8493554 |
tcaactgtagccttcctaataatttgaacatatttgaaa-atatttcatctgtggaagtaaactctgcaacgtctgtatttttaaacacatctgaaatct |
8493652 |
T |
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| Q |
97 |
gttccttgcg---atcactttcacaaagagccaaaaagtagttttctgcaataagattgaataca |
158 |
Q |
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| T |
8493653 |
gtgccttgcggtcatcactttcacaaagagccaaaaggtagttttctgcaacaagattgaataca |
8493717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 8520127 - 8520290
Alignment:
| Q |
1 |
tcaactgtagccttcctaatgattttaatatatttgatatagattt----tgaagaagcaaactctgtaatgttcgtatttttcaaaacatccgaaatct |
96 |
Q |
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| T |
8520127 |
tcaactgtagccttcctaataatttgaacatatttgaaa-atatttcatctgtggaagtaaactctgcaacgtctgtatttttaaacacatctgaaatct |
8520225 |
T |
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| Q |
97 |
gttccttgcg---atcactttcacaaagagccaaaaagtagttttctgcaataagattgaataca |
158 |
Q |
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| T |
8520226 |
gtgccttgcggtcatcactttcacaaagagccaaaaggtagttttctgcaacaagattgaataca |
8520290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 31458308 - 31458159
Alignment:
| Q |
7 |
gtagccttcctaatgattttaatatatttgatatagattttgaagaagcaaactctgtaatgttcgtatttttcaaaacatccgaaatctgttccttgcg |
106 |
Q |
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| T |
31458308 |
gtagccttcccaatgattggaatatatttgatatagattttgcagatttaagctttgttatgtctatatttttcaacacgtccaaaatctgtgtcttgcg |
31458209 |
T |
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| Q |
107 |
atcactttcacaaagagccaaaaagtagttttctgcaataagattgaata |
156 |
Q |
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| T |
31458208 |
gtcactttcacagagagccaataagtaactttctgcaacaagattgaata |
31458159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 31447901 - 31447829
Alignment:
| Q |
111 |
ctttcacaaagagccaaaaagtagttttctgcaataagattgaatacaaataagttttcattagaattttgtt |
183 |
Q |
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| T |
31447901 |
ctttgacaaagagctaataagtaactttctgcaacaagattgaatacatctaagtttccagaagaattttgtt |
31447829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 15172555 - 15172434
Alignment:
| Q |
2 |
caactgtagccttcctaatgattttaatatatttgatatagattttgaagaagcaaactctgtaatgttcgtatttttcaaaacatccgaaatctgt--t |
99 |
Q |
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|||| |||| ||||||||||||| |||||||||||||||||||| ||||| |||| |||| |||||| |||||||||| ||||||||||| ||| |
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| T |
15172555 |
caacagtagtcttcctaatgattcgaatatatttgatatagatttcgaagatgcaagctctctaatgtctatatttttcaacacatccgaaatatgtgca |
15172456 |
T |
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| Q |
100 |
ccttgcgatcactttcacaaag |
121 |
Q |
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| T |
15172455 |
ccttgcagtcactttcacaaag |
15172434 |
T |
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