View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_high_4 (Length: 471)
Name: NF0950_high_4
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 27446776 - 27446350
Alignment:
| Q |
16 |
attaaagaaacaacgtgtgcagagggattaattacatgtagtatagtacactagtaacctatgagtatattgatgagtattgaataaactatattgatga |
115 |
Q |
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| T |
27446776 |
attaaagaaacaacgtgtgcagagggattaattacatgtagtatagtacactagtaacctatgagtatattgatgagtattgaataaactacattgatga |
27446677 |
T |
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| Q |
116 |
gttttaaattaatggttgagatcattttattgtgtgaaactatgattaaaatttgaactaatcgatttcatatctatgactgagatttactaaagcgtac |
215 |
Q |
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| T |
27446676 |
gttttaaattaatggctgaaatcattttattatgcgaaactatgattaaaatctagaccgaccaattttatatttacggctgagatgtactacagcgtgc |
27446577 |
T |
|
| Q |
216 |
aactgcgtgtaatatttacaatacaaaatcctaatccgaggttatatggataggttcaatgtttcattgcatggaatataagggttgtcttgtactgatg |
315 |
Q |
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| T |
27446576 |
aactgcgtgtgatatttacagcatgaaatcctaatccgaggttatatggataggttcaatgtttcattgcatggaatataagggttgtcttgtactgatg |
27446477 |
T |
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| Q |
316 |
tgttggtgttttcatgttttgttgttttttggtgagtgggctatagatagtacaaatcagaaaaaaggtgattaagaaagtttgtttgtgaatgtgtgtg |
415 |
Q |
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| T |
27446476 |
tgttggtgttttcatgttttgttgttttatggtgagtgggctatagatagtacaaatcagaaaaaaggtgattaagaaagtttgtttgtgaatgtgtgtg |
27446377 |
T |
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| Q |
416 |
agatctttagagcgtgcaaaataatac |
442 |
Q |
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| T |
27446376 |
agatctttagagcgtgcaaaataatac |
27446350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 22042231 - 22042095
Alignment:
| Q |
117 |
ttttaaattaatggttgagatcattttattgtgtgaaactatgattaaaatttgaactaatcgatttcatatctatgactgagatttactaaagcgtaca |
216 |
Q |
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| T |
22042231 |
ttttaaattgatgactgaaatcattttactgtgtaaaactgtgattaaaatctgaaccgatcgatctcatatctacgattgagatatgctacagcgtgca |
22042132 |
T |
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| Q |
217 |
actgcgtgtaatatttacaatacaaaatcctaatccg |
253 |
Q |
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| T |
22042131 |
actacgtgtaatatttacagcagaaaatcataatccg |
22042095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 252
Target Start/End: Original strand, 30198211 - 30198344
Alignment:
| Q |
117 |
ttttaaattaatggttgagatcattttattgtgtgaaactatgattaaaatttgaactaatcgatttcatatctatgactgagatttactaaagcgtaca |
216 |
Q |
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| T |
30198211 |
ttttaaattgatggctgagattattttactgtgtgaaactgtgatt-aaatctgaaccaatggatatcaaatctataattgagatgtgctacagcgtgca |
30198309 |
T |
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| Q |
217 |
actgcgtgtaatatttacaatacaaaatcctaatcc |
252 |
Q |
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| T |
30198310 |
actgcgtgtaa-atttacaccagcaaatcctaatcc |
30198344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 38953572 - 38953620
Alignment:
| Q |
117 |
ttttaaattaatggttgagatcattttattgtgtgaaactatgattaaa |
165 |
Q |
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||||||||| |||| |||||| |||||| ||||||||||| |||||||| |
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| T |
38953572 |
ttttaaattgatggctgagattattttactgtgtgaaactgtgattaaa |
38953620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 11106771 - 11106819
Alignment:
| Q |
117 |
ttttaaattaatggttgagatcattttattgtgtgaaactatgattaaa |
165 |
Q |
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| T |
11106771 |
ttttaaattgatggttgagattattttattgtgtgaaattgtgattaaa |
11106819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 25452638 - 25452686
Alignment:
| Q |
117 |
ttttaaattaatggttgagatcattttattgtgtgaaactatgattaaa |
165 |
Q |
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| T |
25452638 |
ttttaaattgatggctgagattattttactgtgtgaaactgtgattaaa |
25452686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 40799842 - 40799890
Alignment:
| Q |
117 |
ttttaaattaatggttgagatcattttattgtgtgaaactatgattaaa |
165 |
Q |
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||||||||| |||| ||||||||||||| | ||||||||| |||||||| |
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| T |
40799842 |
ttttaaattgatggatgagatcattttactttgtgaaactttgattaaa |
40799890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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