View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_1 (Length: 863)
Name: NF0950_low_1
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 30 - 855
Target Start/End: Original strand, 32936957 - 32937773
Alignment:
| Q |
30 |
agcagctcagactcacagccgccggttgctaccagcggccgcacccggtcacactttagcagccggaaaatctcaccaacaagcataacaatcgaattcg |
129 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32936957 |
agcagctcagactcacagccgccggttgctaccaccggccgcacccggtcacactttagcagccggaaaatctcaccaacaagcataacaatcgaattcg |
32937056 |
T |
|
| Q |
130 |
aaaaaaccaaaagaacagcgaaaaagcatttacccaacggtgattcttacatgggaactttctccggcaacaacacaccaaacggatcaggaaaatatac |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32937057 |
aaaaaaccaaaagaacagcgaaaaagcatttacccaacggtgattcttatatgggaactttctccggcaacaacacaccaaacggatcaggaaaatatac |
32937156 |
T |
|
| Q |
230 |
atggaacgatggttgtatctacgaaggtgaatggaaacgaggaaaagcttccggaaatggaaaattctcgtggccttcaggttctatttacgaaggcgag |
329 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32937157 |
atggaacgatggttgtatctacgaaggtgaatggaaacgaggaaaagcttccggaaatggtaaattctcgtggccttcaggttctatttacgaaggcgag |
32937256 |
T |
|
| Q |
330 |
tttaagttaggtaaaatggaaggttctggaacgtttactggatccgacggagatatttacagtggttcatggagttccgatagaaaaaacggttacggaa |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32937257 |
tttaagttaggtaaaatggaaggttctggaacttttaccggatccgacggtgatatttacagtggttcatggagttccgatagaaaaaacggttacggaa |
32937356 |
T |
|
| Q |
430 |
agaaacgttatggtaacggtgattattatgaaggttggtggaagaagaatgttcaagaaggaaaagggaggtatgtttggaaaaacgggaatgagtatat |
529 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32937357 |
agaaacgttatgttaacggtgattattatgaaggttggtggaagaagaatgttcaagaaggaaaagggaggtatgtttggaaaaacgggaatgagtatat |
32937456 |
T |
|
| Q |
530 |
tggtgaatggaagaacggtgttattaacggaagaggaacgcttgtttggttgaatgggaatcgttacgaaggtgaatgggagaatggtgttcccaaaggg |
629 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32937457 |
tggtgaatggaagaacggtgttattaacggaagaggaactcttgtttggttgaatgggaatcgttatgaaggtgaatgggagaatggtgttcccaaaggg |
32937556 |
T |
|
| Q |
630 |
caaggtgtgtttacttggcctgatggaagttgctatgttgggaattggaataataatagtaataatgattttcaatcttctttattgaatgggagttttt |
729 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32937557 |
caaggtgtgtttacttggcctgatggaagttgctatgttgggaattg---------taataataatgattttcaatcttctttattgaatgggagttttt |
32937647 |
T |
|
| Q |
730 |
atcctggtgatgattttgctgtgacaatgaggaaaaggtgttttgttgaaggtggaaaggattttgggaagatttgtatttgggaatctgatggagaaaa |
829 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32937648 |
atcctggtgatgattttgctgtgacaatgaggaaaaggtgttttgttgaaggtggaaaggattttgggaagatttgtatttgggaatctgatggagaaaa |
32937747 |
T |
|
| Q |
830 |
aggtgatataacttgtgatattgttg |
855 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
32937748 |
aggtgatataacttgtgatattgttg |
32937773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 230 - 539
Target Start/End: Original strand, 24523094 - 24523403
Alignment:
| Q |
230 |
atggaacgatggttgtatctacgaaggtgaatggaaacgaggaaaagcttccggaaatggaaaattctcgtggccttcaggttctatttacgaaggcgag |
329 |
Q |
| |
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||||| ||| ||||| || ||||||||||||||||||||||| |||||||| || || || ||||| || ||||||||||| | | |||||| || ||| |
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| T |
24523094 |
atggaccgacggttgcatgtacgaaggtgaatggaaacgaggtaaagcttcagggaaagggaaattttcatggccttcaggcgcgacttacgagggagag |
24523193 |
T |
|
| Q |
330 |
tttaagttaggtaaaatggaaggttctggaacgtttactggatccgacggagatatttacagtggttcatggagttccgatagaaaaaacggttacggaa |
429 |
Q |
| |
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|| |||| ||| ||||||||| | ||||| || |||||||||||| |||| || |||| |||||||| |||||||||||| |||| | ||| |
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| T |
24523194 |
ttcaagtcgggtcgaatggaaggattcggaacattcgttggatccgacggtgatacatatcgtgggtcatggagctccgatagaaaacacgggttcggtc |
24523293 |
T |
|
| Q |
430 |
agaaacgttatggtaacggtgattattatgaaggttggtggaagaagaatgttcaagaaggaaaagggaggtatgtttggaaaaacgggaatgagtatat |
529 |
Q |
| |
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|||||||||| | |||||||||| || ||||| ||||||||| || |||||||| || |||| | || |||||||| || |||||||||||| | |
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| T |
24523294 |
agaaacgttacgcgaacggtgatttatacgaagggtggtggaagcgtaacgttcaagatggtcaaggacgttacgtttggaagaatgggaatgagtatgt |
24523393 |
T |
|
| Q |
530 |
tggtgaatgg |
539 |
Q |
| |
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|||||||||| |
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| T |
24523394 |
tggtgaatgg |
24523403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 800 - 855
Target Start/End: Original strand, 24523634 - 24523689
Alignment:
| Q |
800 |
gatttgtatttgggaatctgatggagaaaaaggtgatataacttgtgatattgttg |
855 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||| |||||||||||||||| |
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|
| T |
24523634 |
gatttgtatttgggaatctgaaggtgaagctggtgatattacttgtgatattgttg |
24523689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 408 - 541
Target Start/End: Complemental strand, 39807734 - 39807601
Alignment:
| Q |
408 |
gatagaaaaaacggttacggaaagaaacgttatggtaacggtgattattatgaaggttggtggaagaagaatgttcaagaaggaaaagggaggtatgttt |
507 |
Q |
| |
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||||||||||| || | ||| ||||||||||| |||| |||||| |||||||| ||||||| | || | ||||| || |||| |||||||| | |
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| T |
39807734 |
gatagaaaaaatgggttcggtgagaaacgttatagtaatggtgatgtgtatgaaggatggtggaggtgtaacttgcaagatggtgaaggaaggtatgtgt |
39807635 |
T |
|
| Q |
508 |
ggaaaaacgggaatgagtatattggtgaatggaa |
541 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |
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| T |
39807634 |
ggaaaaacgggaatgagtatgttggtgaatggaa |
39807601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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