View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0950_low_12 (Length: 444)

Name: NF0950_low_12
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0950_low_12
NF0950_low_12
[»] chr3 (2 HSPs)
chr3 (14-260)||(39747742-39747988)
chr3 (285-348)||(39747659-39747722)
[»] chr5 (1 HSPs)
chr5 (130-162)||(41932045-41932077)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 39747988 - 39747742
Alignment:
Q  14 atattaagaagattcaattgaaattgtaaacnnnnnnnttgtactatttttacaatcccttgtttttaggggaaagagatatgataatctaaagtttagt 113  Q
    ||||||||||||||||||||||||||||||        |||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  39747988 atattaagaagattcaattgaaattgtaaaaaaaaaaattgtactattttaacaatcccttattttcaggggaatgagatatgataatctaaagtttagt 39747889  T
Q  114 cgagaggtaattgaagtctgataaaaaattgtttcacacataaatcaaaatcttcacattgttgatgtcatgcattaaattagtctttaattaatattaa 213  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39747888 cgagaggtaagtgaagtctaataaaaaattgtttaacacataaatcaaaatctttacattgttgatgtcatgcattaaattagtctttaattaatattaa 39747789  T
Q  214 tatgtggaaatacctaaatattcagatttaagaccaacaaacataac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39747788 tatgtggaaatacctaaatattcagatttaagaccaacaaacataac 39747742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 39747722 - 39747659
Alignment:
Q  285 attgttgttaacatttaaaaataatctaagaaaaacaacctaagactaaattaagggtgagttg 348  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39747722 attgttgttaacatttaaaaataatctaagaaaaacaaccttagactaaattaagggtgagttg 39747659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 41932077 - 41932045
Alignment:
Q  130 tctgataaaaaattgtttcacacataaatcaaa 162  Q
    ||||||||||||||||||||| |||||||||||    
T  41932077 tctgataaaaaattgtttcactcataaatcaaa 41932045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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