View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0950_low_15 (Length: 399)

Name: NF0950_low_15
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0950_low_15
NF0950_low_15
[»] chr2 (6 HSPs)
chr2 (18-294)||(36759919-36760195)
chr2 (126-294)||(36788023-36788191)
chr2 (123-282)||(36796423-36796582)
chr2 (124-290)||(36775339-36775505)
chr2 (21-114)||(36796248-36796341)
chr2 (79-122)||(36775216-36775259)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 36759919 - 36760195
Alignment:
Q  18 gcaagatagatagattcatcctttctaattttcattttcctaattagtgttacttacattttgcagctaacaacaagattcaaaacaaagaaaatatggt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36759919 gcaagatagatagattcatcctttctaattttcattttcctaattagtgttacttacattttgcagctaacaacaagattcaaagcaaagaaaatatggt 36760018  T
Q  118 gatgcaagtcactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatcca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36760019 gatgcaagtcactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatcca 36760118  T
Q  218 cttgtgaaaaattcaaagaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactgg 294  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36760119 cttgtgaaaaattcaaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactgg 36760195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 126 - 294
Target Start/End: Original strand, 36788023 - 36788191
Alignment:
Q  126 tcactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtgaa 225  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36788023 tcacaagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtgaa 36788122  T
Q  226 aaattcaaagaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactgg 294  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36788123 aaattcaaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactgg 36788191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 123 - 282
Target Start/End: Original strand, 36796423 - 36796582
Alignment:
Q  123 aagtcactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgt 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  36796423 aagtgactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcctccttatattcacccacttgt 36796522  T
Q  223 gaaaaattcaaagaattatctaagtgctaagagtcttgaaatttgcaccgagagccttgg 282  Q
    |||||||||||| || ||| ||||||  ||||||||  |||| ||||||||||| |||||    
T  36796523 gaaaaattcaaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttgg 36796582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 124 - 290
Target Start/End: Original strand, 36775339 - 36775505
Alignment:
Q  124 agtcactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtg 223  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36775339 agtcactggtgaattggatatatggagttcaatcttgacccaaaaaaagaaagatgaagcttcacaatcaaaaactcctccttatattcacccacttgtg 36775438  T
Q  224 aaaaattcaaagaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaa 290  Q
    ||||||||| | |||||| ||||||  |||||||||||||| ||||| ||||  |||||||||||||    
T  36775439 aaaaattcacaaaattatttaagtgaaaagagtcttgaaatgtgcactgagattcttggatcagaaa 36775505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 36796248 - 36796341
Alignment:
Q  21 agatagatagattcatcctttctaattttcattttcctaattagtgttacttacattt-tgcagctaacaacaagattcaaaacaaagaaaatat 114  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  36796248 agatagatagattcatcctttc-aattttcattttcctaagtagtgttacttacatttatgcagctaacaacaagattcaaagcaaagaaaatat 36796341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 36775216 - 36775259
Alignment:
Q  79 tgcagctaacaacaagattcaaaacaaagaaaatatggtgatgc 122  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||    
T  36775216 tgcagctaacaaaaaggttcaaagcaaagaaaatatggtgatgc 36775259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University