View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_2 (Length: 807)
Name: NF0950_low_2
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 659; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 16 - 706
Target Start/End: Original strand, 12843354 - 12844044
Alignment:
| Q |
16 |
ataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaaaatgagttaaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843354 |
ataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaaaatgagttaaga |
12843453 |
T |
|
| Q |
116 |
acataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttacaatgtaaaatcaatcttaacggtacctcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843454 |
acataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttacaatgtaaaatcaatcttaacggtacctcc |
12843553 |
T |
|
| Q |
216 |
aagcttgaacgcgaattccgatactaaaagcacaataagcatcaatggacgcataagcaatttgatcttcataaagattctctgcattccaattgctcct |
315 |
Q |
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| T |
12843554 |
aagcttgaacgcgaattccgatactaaaagcacaataagcatcaatggacgcataagcaatttgatcttcataaagattctctgcattccaattgctcct |
12843653 |
T |
|
| Q |
316 |
tccaacttgtacaatctgatccacttcgaaatcaagccaattcctcacaattacattcatcgattcacgtgaaagattttcaccattgaacctgtaatgc |
415 |
Q |
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| T |
12843654 |
tccaacttgtacactctgatccacttcgaaatcaagccaattcctcacaattacatttatcgattcacgtgaaagattttcaccattgaacctgtaatgc |
12843753 |
T |
|
| Q |
416 |
ctcagatcctgaggatctttccacatttgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttag |
515 |
Q |
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| T |
12843754 |
ctcagatcctgaggatctttccacatttgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttag |
12843853 |
T |
|
| Q |
516 |
gatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagctgccactgatgcataactgtagcgtgtcggc |
615 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843854 |
gatgacggagaaagttgcagagactaaccggaatcatatcggcgagagagaggtggaagataagacagctgccactgatgcataactgtagcgtgtcggc |
12843953 |
T |
|
| Q |
616 |
gggaggatcaaggttgccgggagtccattgaacgccaaggccgacaacgagattacggttacggagattacggttgcggcgaaggtattga |
706 |
Q |
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| T |
12843954 |
gggaggatcaaggttgccgggagtccattgaacgccaaggccgacaatgagattacggttacagagattacggttgcggcgaaggtattga |
12844044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 86 - 681
Target Start/End: Complemental strand, 12862057 - 12861462
Alignment:
| Q |
86 |
taacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
185 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12862057 |
taacactataatctctaaaatgagttacgaacataagagtgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
12861958 |
T |
|
| Q |
186 |
caatgtaaaatcaatcttaacggtacctccaagcttgaacgcgaattccgatactaaaagcacaataagcatcaatggacgcataagcaatttgatcttc |
285 |
Q |
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|| |||||||| ||||||| |||||||||||||||| | | |||||||||| ||| ||| ||||||||||||||||||||||||||| ||||| | | |
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| T |
12861957 |
gaaagtaaaatcgatcttaagggtacctccaagcttggaaacaaattccgataagaaacgcaaaataagcatcaatggacgcataagcaacttgatgtgc |
12861858 |
T |
|
| Q |
286 |
ataaagattctctgcattccaattgctccttccaacttgtacaatctgatccacttcgaaatcaagccaattcctcacaattacattcatcgattcacgt |
385 |
Q |
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||||||||||||| ||||||||| ||||| ||||||| | | |||||||||||| |||| |||| || |||||||||||| ||| ||||||| |||| |
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| T |
12861857 |
ataaagattctcttgattccaattactcctaccaacttcaatactctgatccactttgaaaccaagacatttcctcacaatttcatccatcgataaacgt |
12861758 |
T |
|
| Q |
386 |
gaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcgatgatcaaatctctccagccttctacgatcagcag |
485 |
Q |
| |
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|||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||| |
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| T |
12861757 |
gaaagagcttcaccattgaactcgtaattcctcaaatcctgaggatttttccacatttgcaagcgatgatcaaatctctccagcttcctacgatctgcag |
12861658 |
T |
|
| Q |
486 |
cgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagct |
585 |
Q |
| |
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| T |
12861657 |
cgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactgaccggaatcatatctgcgcgagagaggtggaagataagacagct |
12861558 |
T |
|
| Q |
586 |
gccactgatgcataactgtagcgtgtcggcgggaggatcaaggttgccgggagtccattgaacgccaaggccgacaacgagattacggttacggag |
681 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||| ||| ||||| |
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| T |
12861557 |
gccaccgatgcataactgtagcgtgtcggcgggaggatcaaggttgcggttagtccattgaacgccgaggccgacaacaagattacagttgcggag |
12861462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 13125763 - 13125837
Alignment:
| Q |
87 |
aacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactata |
161 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
13125763 |
aacactataatctctaaaatgagttaggaacataagagtgattaatcgatcttaacagtacacattaacactata |
13125837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 13125589 - 13125629
Alignment:
| Q |
143 |
agtagacattaacactataatcttgaatcttgattgaaatt |
183 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||| |
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| T |
13125589 |
agtagacattaacactatgatcttgaatcttgatagaaatt |
13125629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 13125540 - 13125587
Alignment:
| Q |
16 |
ataagtgcaatactcaacaagactaatatcaaacactatatgattcta |
63 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| ||| |||||| |
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|
| T |
13125540 |
ataagtgcaatactcaacaacactaaaatcaaacactgtattattcta |
13125587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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