View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_20 (Length: 373)
Name: NF0950_low_20
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 39244389 - 39244685
Alignment:
| Q |
15 |
tatagtgagaagttgtgactacccttggcaataaatttgatagattttctatttcccttgcagtgaaacatgactgtgtatttggcgatgacttggattt |
114 |
Q |
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| T |
39244389 |
tatagtgagaagttgtgacttcccttggcaataaatttgatagattttctatttcccttgcagtgaaacatgactgtgtatttggcgatgacttagattt |
39244488 |
T |
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| Q |
115 |
aaatgaaataagctatgtatcagaggtatcttgcagttctatttcttccacatacttctttatctcataaacaccgacattggtaatattatgccagatg |
214 |
Q |
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| T |
39244489 |
aaatgaaataagctatgtatcagaggtatcttgcagttctatttcttccacatacttctttatctcataaacaccgacattggtaatattatgccagatg |
39244588 |
T |
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| Q |
215 |
catcagcaaacttaccatatgatatgtcactgcagattctccgggagtttgatcgccccattgtctattctttgtctcccggaacaagtgtgacacc |
311 |
Q |
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| T |
39244589 |
catcagcaaacttaccatatgatatgtcactgcaggttctccgggagtttgatcgccccattgtctattctttgtctcccggaacaagtgtgacacc |
39244685 |
T |
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 37382913 - 37382985
Alignment:
| Q |
71 |
cttgcagtgaaacatgactgtgtatttggcgatgacttggatttaaatgaaataagctatgtatcagaggtat |
143 |
Q |
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| T |
37382913 |
cttgcagtgaaacatgactgtgtgtttggagaggacttggatttaagtgagataacctatgtatctgaggtat |
37382985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 37360734 - 37360801
Alignment:
| Q |
75 |
cagtgaaacatgactgtgtatttggcgatgacttggatttaaatgaaataagctatgtatcagaggta |
142 |
Q |
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| T |
37360734 |
cagtgaaacatgactgtgtgtttggcgaggacttggatttaaatgagataacctatgcatctgaggta |
37360801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 37367328 - 37367261
Alignment:
| Q |
75 |
cagtgaaacatgactgtgtatttggcgatgacttggatttaaatgaaataagctatgtatcagaggta |
142 |
Q |
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| T |
37367328 |
cagtgaaacatgactgtgtgtttggcgaggacttggatttaaatgagataacctatgaatctgaggta |
37367261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 37375563 - 37375635
Alignment:
| Q |
71 |
cttgcagtgaaacatgactgtgtatttggcgatgacttggatttaaatgaaataagctatgtatcagaggtat |
143 |
Q |
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| T |
37375563 |
cttgcagtgaaacatgattgtgtgtttggcgagaactttgatttaaatgagataacctatgtatctgaggtat |
37375635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 41229632 - 41229560
Alignment:
| Q |
71 |
cttgcagtgaaacatgactgtgtatttggcgatgacttggatttaaatgaaataagctatgtatcagaggtat |
143 |
Q |
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| T |
41229632 |
cttgcagtgaaacacgactgcgtgtttggcgagaacttcgatttaaacgagataacctatgtatctgaggtat |
41229560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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