View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_23 (Length: 344)
Name: NF0950_low_23
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 74 - 320
Target Start/End: Original strand, 33162935 - 33163181
Alignment:
| Q |
74 |
atttcaaaactgttaggtcctgttaattcctagttactttctcatacaatgtcaatgtggctctttattcaaacattcacagtagcatatttcctatgtt |
173 |
Q |
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| T |
33162935 |
atttcaaaactgttaggtcttgttaattcctagttactttctcatacaatgtcaatgtggctctttattcaaacattcacagtagcatatttcctatgtt |
33163034 |
T |
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| Q |
174 |
atcatgaatgtcagcgtgtaagttccagtgtccatgccttgtgtcactgcttcttggagataaacacattattttgattaattgttagatggatgcctca |
273 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33163035 |
atcatgaatgtcagtgtgtaagttccagtgtccatgccttgtgtcactgcttcttggagataaacacattattttgattaattgttagatggatgcctca |
33163134 |
T |
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| Q |
274 |
aacaagtcagatgatgtggggaaaacccttgagacacaagccaaagc |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33163135 |
aacaagtcagatgatgtggggaaaacccttgagacacaagccaaagc |
33163181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 40925177 - 40925102
Alignment:
| Q |
5 |
cataaacaacattcattcctttgtaaattgattcattaaggtgcacattcatctctatattatccccagatttcaa |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40925177 |
cataaacaacattcattcctttgtaaattgattcattaaggtgcacattcatctctatattatccccagatttcaa |
40925102 |
T |
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