View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0950_low_24 (Length: 343)
Name: NF0950_low_24
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 16623856 - 16624126
Alignment:
| Q |
1 |
tttattcagatgctaactgtttcttatatttgattgactgccatagtaattgtacagaaaaggtggagaaggttgtgagaatcaaacagaagcaggaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16623856 |
tttattcagatgctaactgtttcttatatttgattgattgccagagtaattgtacagaaaaggtggagaaggttgtgagaatcaaacagaagcaggaaga |
16623955 |
T |
|
| Q |
101 |
agacaaggcggaagtcaaacatcattcatttgagtgagtattgtgaatatttatgtgattattccattttatatgctagatctaattaaggtgttttttc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16623956 |
agacaaggcgaaagtcaaacatcattcatttgggtgagtattgtgaatatttatgtgattattccattttatatgctagatctaattaaggtgttttgtc |
16624055 |
T |
|
| Q |
201 |
cttttgttttgtcttgtttgcaggataaatgaatcttccaatagactagtaagaacagaaaggatgatgtc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16624056 |
cttttgttttgtcttgtttgcaggataaatgaatcttccaatagaccagtaagaacagaaaggatgatgtc |
16624126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 23947305 - 23947199
Alignment:
| Q |
45 |
agtaattgtacagaaaaggtggagaaggttgtgagaatcaaacagaagcaggaagaagacaaggcggaagtcaaacatcattcatttgagtgagtattgt |
144 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| |||||| || |||||||||| ||| |||||| | |
|
|
| T |
23947305 |
agtaattgtaaagaaaaggtggaggaggttgtcagaatcaaacagaagcaggaggaagataaggcacaagtcagacttcattcatttcagttagtattct |
23947206 |
T |
|
| Q |
145 |
gaatatt |
151 |
Q |
| |
|
|||||| |
|
|
| T |
23947205 |
taatatt |
23947199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 56241013 - 56240916
Alignment:
| Q |
43 |
atagtaattgtacagaaaaggtggagaaggttgtgagaatcaaacagaagcaggaagaagacaaggcggaagtcaaacatcattcatttgagtgagta |
140 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||||||||||| |||||||| ||||| ||||| |||||| || |||||||||| ||| |||| |
|
|
| T |
56241013 |
atagtaattgtaaagaaaaggtggacaaggttgtcagaatcaaacacaagcaggaggaagataaggcacaagtcacacttcattcatttcagttagta |
56240916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 16105639 - 16105745
Alignment:
| Q |
45 |
agtaattgtacagaaaaggtggagaaggttgtgagaatcaaacagaagcaggaagaagacaaggcggaagtcaaacatcattcatttgagtgagtattgt |
144 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| |||||| || |||||||||| ||| |||||| | |
|
|
| T |
16105639 |
agtaattgtaaagaaaaggtggaggaggttgtcagaatcaaacagaagcaggaggaagataaggcacaagtcagacttcattcatttcagttagtattct |
16105738 |
T |
|
| Q |
145 |
gaatatt |
151 |
Q |
| |
|
|||||| |
|
|
| T |
16105739 |
taatatt |
16105745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University