View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_31 (Length: 305)
Name: NF0950_low_31
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_31 |
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| [»] scaffold0964 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 51 - 240
Target Start/End: Original strand, 25678048 - 25678237
Alignment:
| Q |
51 |
cataggattacagaccataggcacacttggtgctcaaaaatagctagggcctagccctcacacaaagacgtgcaacaaggaattaagaagagcacgtctt |
150 |
Q |
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| T |
25678048 |
cataggattacagaccataggcacacttggtgctcaaaaatagccagggcttagccctcacacaaagacatgcaacaaggaattaagaaaagcacgtctt |
25678147 |
T |
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| Q |
151 |
acacaacagatttttatatctcctcgtgcaggaaaatccccaatttagcccttaattttttaaactgcttacaatctagggcttcggtga |
240 |
Q |
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| T |
25678148 |
acacaacagatttttatatctcctcatgcaagaaaatccccaatttggctcttaatttttcaaactacttaccatctagggatttggtga |
25678237 |
T |
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Target: scaffold0964 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0964
Description:
Target: scaffold0964; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 12 - 47
Alignment:
| Q |
53 |
taggattacagaccataggcacacttggtgctcaaa |
88 |
Q |
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| T |
12 |
taggattacagaccataggcacacttgatgctcaaa |
47 |
T |
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