View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_34 (Length: 295)
Name: NF0950_low_34
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_34 |
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| [»] chr7 (4 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 164 - 295
Target Start/End: Original strand, 13749662 - 13749793
Alignment:
| Q |
164 |
caacaaatgcagcgaacaatattatcacctctcacctacacatgatcttctaatttcttcttcaatgtttattctttctttcttataaacaaattcctaa |
263 |
Q |
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| T |
13749662 |
caacaaaggcatcgaacaacattatcacctctcacctatacatgatcttctgatttcatcttcactgtttattctttctttcttataaacaaattcctaa |
13749761 |
T |
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| Q |
264 |
aaatgaaacccatattttcaatttaattaaga |
295 |
Q |
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| T |
13749762 |
aaatgaaacccatattttcaatttaattaaga |
13749793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13749607 - 13749679
Alignment:
| Q |
1 |
gaagttttcttatgatgtctaggaatagttttaacaatcaaagtaacaaaaccagcaacaaatgcagcgaaca |
73 |
Q |
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| T |
13749607 |
gaagttttcttatgatgtctaggaacagttttaacaatcaaagtaacaaaaccatcaacaaaggcatcgaaca |
13749679 |
T |
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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 27072266 - 27072218
Alignment:
| Q |
187 |
atcacctctcacctacacatgatcttctaatttcttcttcaatgtttat |
235 |
Q |
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| T |
27072266 |
atcacctctcacctacacaggatcttctaatttcttcttcagtgtttat |
27072218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 27206047 - 27206095
Alignment:
| Q |
187 |
atcacctctcacctacacatgatcttctaatttcttcttcaatgtttat |
235 |
Q |
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| T |
27206047 |
atcacctctcacctacacaggatcttctaatttcttcttcagtgtttat |
27206095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 164 - 295
Target Start/End: Original strand, 56234179 - 56234313
Alignment:
| Q |
164 |
caacaaatgcagcgaacaatattatcacctctcacctacacatgatcttctaatttctt---cttcaatgtttattctttctttcttataaacaaattcc |
260 |
Q |
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| T |
56234179 |
caacaaaagcagcggacaatattatcacctcccacttacacatgatcttcttctttttttttcttcagtgtttattctttctttcttataaacaaattcc |
56234278 |
T |
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| Q |
261 |
taaaaatgaaacccatattttcaatttaattaaga |
295 |
Q |
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| T |
56234279 |
taaaaatgaaacccatgttatcaatttaattaaga |
56234313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 56234120 - 56234204
Alignment:
| Q |
1 |
gaagttttcttatgatgtctaggaa----tagttttaacaatcaaagtaacaaaaccagcaacaaatgcagcgaacagtattatc |
81 |
Q |
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| T |
56234120 |
gaagttttcttatgatgtctaggaacagttagttttaacaatcaaagtaacaaaacgagcaacaaaagcagcggacaatattatc |
56234204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 46693281 - 46693357
Alignment:
| Q |
208 |
atcttctaatttcttcttcaatgtttattctttctttcttataaacaaattcctaaaaatgaaacccatattttcaa |
284 |
Q |
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| T |
46693281 |
atcttctaatttcttcttcaatgttaattctttatttcttataaacaaattccttaaaatcaaacccatattttcaa |
46693357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 34015139 - 34015083
Alignment:
| Q |
239 |
ttctttcttataaacaaattcctaaaaatgaaacccatattttcaatttaattaaga |
295 |
Q |
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| T |
34015139 |
ttctttcttataaacaaattcttgaaaatcaaacccatattttcaatttaattaaga |
34015083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 10570053 - 10570125
Alignment:
| Q |
6 |
tttcttatgatgtctaggaatagttttaacaatcaaagtaacaaaaccagcaacaaatgcagcgaacagtatt |
78 |
Q |
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| T |
10570053 |
tttcttatgatgtctaggaacagttttaacaatcaaagtaacaaaaccagcaacaaaagcagcaaacaatatt |
10570125 |
T |
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