View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_36 (Length: 290)
Name: NF0950_low_36
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 38568832 - 38569100
Alignment:
| Q |
22 |
catcatcatcatgtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgat |
121 |
Q |
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| T |
38568832 |
catcatcatcatgtaactgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgat |
38568931 |
T |
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| Q |
122 |
atgcaggtgttcggacacgacactccctgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggtttta |
221 |
Q |
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| T |
38568932 |
atgcaggtgttcggacacgacactccccgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggtttta |
38569031 |
T |
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| Q |
222 |
tgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcat |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38569032 |
tgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcat |
38569100 |
T |
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