View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0950_low_37 (Length: 286)
Name: NF0950_low_37
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 7709149 - 7708997
Alignment:
| Q | 74 | tattttgggaaaaaaggaatgaaggagtgttacatagtggttaaccaaatcctcatatattatcatatctttaatatcttttttctttcttaggtgctca | 173 | Q |
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| T | 7709149 | tattttgggaaaaaaggaatgaaggagtgttacatagtggttaaccaaatcctcatatattatcatatctttaatatcttttttctttcttaggtgctca | 7709050 | T |
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| Q | 174 | ttttgggtttaaagcaaagcaagtgtgatgtttatggtgacttgttgtgatga | 226 | Q |
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| T | 7709049 | ttttgggtttaaagcaaagcaagtgtgatgtttatggtgacttgttgtgatga | 7708997 | T |
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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 7711246 - 7711165
Alignment:
| Q | 143 | tttaatatcttttttctttcttaggtgctcattttgggtttaaagcaaagcaagt-gtgatgtttatggtgacttgttgtgat | 224 | Q |
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| T | 7711246 | tttaatctcttttttctttcttaggtgctcatcttgggcttaaaacaaagcaagtactga-gtttatggtgacttgttgtgat | 7711165 | T |
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