View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_38 (Length: 276)
Name: NF0950_low_38
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 35357839 - 35357638
Alignment:
| Q |
43 |
cctgtgaaatagacttaagttagaatcttcacataaaaagaaataaaggaaggcaatgatataaatg--------gagagcttcgataataaaactttag |
134 |
Q |
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| T |
35357839 |
cctgtgaaatagacttaagttagaatcttcacataaaaagaaataaaggaaggcaatgatataaatgattaaatggagagcttcgataataaaactttag |
35357740 |
T |
|
| Q |
135 |
atgtttaaatgtctaattaatgttattagttttagaaatgtatattcatacatgcaagtacataatcaagaggatctccactcaattaaagtatccggat |
234 |
Q |
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| T |
35357739 |
atgtttaaatgtctaattaatgttattagttttagaaatgt------atacatgcaagtacataatcaagaggatctccactcaattaaagtatcctgat |
35357646 |
T |
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| Q |
235 |
agaattat |
242 |
Q |
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| T |
35357645 |
agtattat |
35357638 |
T |
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