View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_4 (Length: 560)
Name: NF0950_low_4
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 326 - 560
Target Start/End: Original strand, 43597357 - 43597591
Alignment:
| Q |
326 |
tatggacgaaattgatgctgaaatgcctgatgcgccgagtttatctgtagattttactgatgtgttcactattgaagaaatatttgtaagattaattgaa |
425 |
Q |
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| T |
43597357 |
tatggacgaaattgatgctgaaatgcctgatgcgccgagtttatctgtagattttactgatgtgttcactactgaagaaatatttgtaagattaattgaa |
43597456 |
T |
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| Q |
426 |
attataagtagttaatttataaataaacatggtttgagctattgtctcaattattttttaagattatttgtacccgtgaagcagtgttactgtgggcata |
525 |
Q |
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| T |
43597457 |
attataagtagttaatttataaataaacatggtttgagctattgtctgaattattttttaagattatctgtacccgtgaagcggtgttactgtgggcata |
43597556 |
T |
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| Q |
526 |
aacacttggaaaacatcattcaactatcattgtta |
560 |
Q |
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| T |
43597557 |
aaaacttggaaaacatcattgaactatcattgtta |
43597591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 45 - 321
Target Start/End: Original strand, 43597052 - 43597325
Alignment:
| Q |
45 |
gaaatttacttgtgacactagttgtacttgtacctcacactctctaaatttcaatttatttctannnnnnnncatnnnnnnntaagataagtaaaaaaca |
144 |
Q |
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| T |
43597052 |
gaaatttacttgtgacactagttgtacttgtacctcacactct--aaatttcaatttatttctattttttt-catacaaaaataagataagtaaaaaaca |
43597148 |
T |
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| Q |
145 |
tagtgaacaagtatggaaaattttcggattgcaattttaaccggaaattttacttgaccagaattgcatctttagtgaggaggttttgagtggctaaaat |
244 |
Q |
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| T |
43597149 |
tagtgaacaagtatggaaaattttcggattgcaactttaaccggaaattttacttgaccagaattgcatctttagtgaggaggttttgagtggctaagat |
43597248 |
T |
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| Q |
245 |
ttcagaataaacaaattaatataaattttgatcttacaaatttatggaaattttggttactcctagagatgatgaac |
321 |
Q |
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| T |
43597249 |
ttcagaataaacaaattaatataaattttgatcttacaaatttatggaaattttggttactcctagagatgatgaac |
43597325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 43596977 - 43597010
Alignment:
| Q |
13 |
aatatttaattgaaagtcattttgaggtgtggga |
46 |
Q |
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| T |
43596977 |
aatatttaattgaaagtcattttgaggtgtggga |
43597010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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