View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0950_low_43 (Length: 262)

Name: NF0950_low_43
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0950_low_43
NF0950_low_43
[»] chr4 (19 HSPs)
chr4 (26-262)||(34762945-34763183)
chr4 (208-261)||(22235353-22235406)
chr4 (28-73)||(34754962-34755007)
chr4 (213-261)||(54164911-54164959)
chr4 (231-262)||(3094382-3094413)
chr4 (213-260)||(31933642-31933689)
chr4 (213-256)||(56328548-56328591)
chr4 (155-242)||(23614415-23614498)
chr4 (213-255)||(39160912-39160954)
chr4 (216-261)||(2198042-2198087)
chr4 (213-262)||(14450950-14450999)
chr4 (213-261)||(21224783-21224832)
chr4 (208-261)||(56257428-56257481)
chr4 (213-261)||(19934632-19934680)
chr4 (213-261)||(19934736-19934784)
chr4 (216-260)||(22720607-22720651)
chr4 (213-253)||(29006837-29006877)
chr4 (213-261)||(54164807-54164855)
chr4 (213-261)||(54713092-54713140)
[»] chr3 (12 HSPs)
chr3 (208-260)||(39964290-39964342)
chr3 (213-261)||(9170106-9170154)
chr3 (213-256)||(8504849-8504892)
chr3 (213-255)||(21217166-21217208)
chr3 (213-255)||(24075447-24075489)
chr3 (212-262)||(27786449-27786499)
chr3 (207-260)||(26331308-26331361)
chr3 (207-260)||(39682701-39682754)
chr3 (216-261)||(51617325-51617370)
chr3 (211-256)||(52215976-52216021)
chr3 (213-261)||(39579591-39579639)
chr3 (143-203)||(50626764-50626824)
[»] chr2 (18 HSPs)
chr2 (143-205)||(44587716-44587778)
chr2 (208-250)||(44587736-44587778)
chr2 (213-255)||(3098224-3098266)
chr2 (211-261)||(23143480-23143530)
chr2 (218-260)||(23143589-23143631)
chr2 (211-261)||(23555270-23555320)
chr2 (218-260)||(23555379-23555421)
chr2 (213-255)||(25270954-25270996)
chr2 (216-261)||(5574211-5574256)
chr2 (215-256)||(15119877-15119918)
chr2 (208-261)||(20218639-20218692)
chr2 (215-256)||(38227198-38227239)
chr2 (208-261)||(44587637-44587690)
chr2 (216-256)||(3121523-3121563)
chr2 (213-253)||(13333545-13333585)
chr2 (208-260)||(20218541-20218593)
chr2 (213-261)||(38181858-38181906)
chr2 (208-248)||(40363226-40363266)
[»] chr1 (18 HSPs)
chr1 (145-206)||(15057664-15057725)
chr1 (208-255)||(15057657-15057704)
chr1 (155-262)||(38636222-38636325)
chr1 (213-262)||(19175686-19175735)
chr1 (213-261)||(38834605-38834653)
chr1 (213-261)||(45115268-45115316)
chr1 (213-256)||(8338674-8338717)
chr1 (213-260)||(38758398-38758445)
chr1 (208-261)||(5091763-5091816)
chr1 (208-261)||(17468191-17468244)
chr1 (208-261)||(24419527-24419580)
chr1 (216-261)||(31008253-31008298)
chr1 (213-262)||(36040244-36040293)
chr1 (216-256)||(4060272-4060312)
chr1 (213-261)||(6156628-6156676)
chr1 (213-261)||(14214627-14214675)
chr1 (213-261)||(28725564-28725612)
chr1 (213-261)||(36040140-36040188)
[»] chr7 (20 HSPs)
chr7 (208-260)||(2456674-2456726)
chr7 (208-260)||(3967700-3967752)
chr7 (208-262)||(2456329-2456383)
chr7 (212-261)||(34750322-34750371)
chr7 (219-260)||(47534965-47535006)
chr7 (145-206)||(47708408-47708469)
chr7 (208-252)||(3967798-3967842)
chr7 (145-196)||(3967712-3967763)
chr7 (213-260)||(8127925-8127972)
chr7 (143-201)||(3967782-3967840)
chr7 (213-251)||(28306319-28306357)
chr7 (219-260)||(34750432-34750474)
chr7 (216-261)||(38238885-38238930)
chr7 (215-256)||(41803721-41803762)
chr7 (219-260)||(47708396-47708437)
chr7 (213-253)||(7701190-7701230)
chr7 (213-261)||(10414933-10414981)
chr7 (213-261)||(12274907-12274955)
chr7 (213-261)||(25245241-25245289)
chr7 (159-203)||(34565002-34565046)
[»] chr6 (5 HSPs)
chr6 (213-262)||(16121063-16121112)
chr6 (216-261)||(17773602-17773647)
chr6 (213-261)||(3203665-3203713)
chr6 (213-261)||(6560651-6560699)
chr6 (213-261)||(8146047-8146095)
[»] chr8 (11 HSPs)
chr8 (213-261)||(31810432-31810480)
chr8 (155-206)||(12736372-12736423)
chr8 (213-256)||(27518413-27518456)
chr8 (208-253)||(12736357-12736402)
chr8 (208-253)||(24052921-24052966)
chr8 (213-262)||(31810327-31810376)
chr8 (216-261)||(40098754-40098799)
chr8 (142-202)||(24820302-24820362)
chr8 (213-261)||(31505032-31505080)
chr8 (213-261)||(31505136-31505184)
chr8 (213-253)||(41387860-41387900)
[»] chr5 (8 HSPs)
chr5 (213-256)||(5259483-5259526)
chr5 (218-261)||(42910815-42910858)
chr5 (213-262)||(1098725-1098774)
chr5 (213-258)||(25792944-25792989)
chr5 (213-261)||(10437735-10437783)
chr5 (213-261)||(15549423-15549471)
chr5 (215-255)||(18033455-18033495)
chr5 (213-261)||(41180311-41180359)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 26 - 262
Target Start/End: Original strand, 34762945 - 34763183
Alignment:
Q  26 ctgttgccacagctgtggaatctgtccctgcagagaagaaatcctgcaaacaaaggaatttaacttagcatataatggatagagaaaatcttatctaaaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34762945 ctgttgccacagctgtggaatctgtccctgcagagaagaaatcctgcaaacaaaggaatttaacttagcatataatggagagagaaaatcttatctaaaa 34763044  T
Q  126 tgtaatatactctcattggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtca-tttttcagtgaatctaaaaa 224  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||    
T  34763045 tgtaatatactctcatcggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatggatgtggtcattttttcagtgaacctaaaaa 34763144  T
Q  225 gtag-ttttttggttataatagtgaccggagggagtatg 262  Q
     ||| ||||||| ||||||||||||||||||||||||||    
T  34763145 atagtttttttgattataatagtgaccggagggagtatg 34763183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 22235353 - 22235406
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| ||||||||||| ||  ||||||| |||||||||||||||||||||||||    
T  22235353 ttcaatgaatctaaaatgtgattttttgcttataatagtgaccggagggagtat 22235406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 34754962 - 34755007
Alignment:
Q  28 gttgccacagctgtggaatctgtccctgcagagaagaaatcctgca 73  Q
    |||| |||||| |||||||||||||| |||||||||||||||||||    
T  34754962 gttgacacagccgtggaatctgtccccgcagagaagaaatcctgca 34755007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 54164911 - 54164959
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||||||||| ||| |||||| |||||||||||||||||||| ||||    
T  54164911 tgaatctaaaaaatagatttttgcttataatagtgaccggagggtgtat 54164959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 262
Target Start/End: Original strand, 3094382 - 3094413
Alignment:
Q  231 ttttggttataatagtgaccggagggagtatg 262  Q
    ||||||||||||||||||||||||||||||||    
T  3094382 ttttggttataatagtgaccggagggagtatg 3094413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 31933689 - 31933642
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    ||||||||||||||||   |||| ||||||||||||||||||||||||    
T  31933689 tgaatctaaaaagtagaaatttgcttataatagtgaccggagggagta 31933642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 56328548 - 56328591
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||    
T  56328548 tgaatctaaaatgtagttttttgcttatattagtgaccggaggg 56328591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 23614498 - 23614415
Alignment:
Q  155 aagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatttttcagtgaatctaaaaagtagttttttggttataa 242  Q
    |||||||||||||||| ||||||||||||||    |||||||| |||||    |||| |||| ||||||||| |||||||| ||||||    
T  23614498 aagcaaaaaaccactttttaggttcattgaacacctaatgtatttggtc----ttcaatgaacctaaaaagtggttttttgcttataa 23614415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 39160912 - 39160954
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagg 255  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  39160912 tgaatctaaaatgtagatttttgtttataatagtgaccggagg 39160954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 2198087 - 2198042
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| |  ||||| |||||||||||||||||||||||||    
T  2198087 atctaaaaagtggagttttgcttataatagtgaccggagggagtat 2198042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 14450999 - 14450950
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatg 262  Q
    ||||||||||| |||| |||||| |||||||||||| ||||||| |||||    
T  14450999 tgaatctaaaatgtagatttttgcttataatagtgatcggagggtgtatg 14450950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 21224783 - 21224832
Alignment:
Q  213 tgaatctaaaaagtagttttttggtt-ataatagtgaccggagggagtat 261  Q
    ||||||||||| |||||||||| ||| |||||||||||||||||| ||||    
T  21224783 tgaatctaaaatgtagtttttttgtttataatagtgaccggagggtgtat 21224832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 56257428 - 56257481
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||||||||||||||  |||||  |||||||||||||||||| ||||||    
T  56257428 ttcaatgaatctaaaaagtaactttttacttataatagtgaccggagagagtat 56257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 19934680 - 19934632
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||||||||||| |  ||||| |||||||||||||||||||| ||||    
T  19934680 tgaatctaaaaagtggaattttgcttataatagtgaccggagggtgtat 19934632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 19934736 - 19934784
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||||||||| ||| |||||| |||||||||||| ||||||| ||||    
T  19934736 tgaatctaaaaaatagatttttgcttataatagtgatcggagggtgtat 19934784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 22720607 - 22720651
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    ||||||||||| |  ||||| ||||||||||||||||||||||||    
T  22720607 atctaaaaagtggagttttgcttataatagtgaccggagggagta 22720651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 29006877 - 29006837
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccgga 253  Q
    |||||||||||| ||| |||||| |||||||||||||||||    
T  29006877 tgaatctaaaaaatagatttttgcttataatagtgaccgga 29006837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 54164855 - 54164807
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||||||||||| |  ||||| |||||||||||||||||||| ||||    
T  54164855 tgaatctaaaaagtggaattttgcttataatagtgaccggagggtgtat 54164807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 54713140 - 54713092
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| |||  |||||| |||||||||||||||||||| ||||    
T  54713140 tgaatctaaaatgtaaatttttgcttataatagtgaccggagggtgtat 54713092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 39964342 - 39964290
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  39964342 ttcaatgaatctaaaaagtagttttttgcttataataatgaccggagggagta 39964290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 9170154 - 9170106
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||| ||||    
T  9170154 tgaatctaaaatgtaattttttgcttataatagtgaccggagggtgtat 9170106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 8504892 - 8504849
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||    
T  8504892 tgaatctaaaatgtagatttttgcttataatagtgaccggaggg 8504849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 21217208 - 21217166
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagg 255  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  21217208 tgaatctaaaatgtagatttttgcttataatagtgaccggagg 21217166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 24075489 - 24075447
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagg 255  Q
    ||||||||||| || |||||||| |||||||||||||||||||    
T  24075489 tgaatctaaaatgttgttttttgcttataatagtgaccggagg 24075447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 27786499 - 27786449
Alignment:
Q  212 gtgaatctaaaaagtagttttttggttataatagtgaccggagggagtatg 262  Q
    ||||| |||||||||||||||||| ||||||  ||||||| ||||||||||    
T  27786499 gtgaacctaaaaagtagttttttgcttataaatgtgaccgaagggagtatg 27786449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 26331308 - 26331361
Alignment:
Q  207 tttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    ||||| |||| ||||||||| |||||||| ||||||  ||||||||||||||||    
T  26331308 tttcaatgaacctaaaaagttgttttttgcttataaatgtgaccggagggagta 26331361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 39682701 - 39682754
Alignment:
Q  207 tttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    ||||| |||| ||||||| |||||||||  |||||||| |||||||||||||||    
T  39682701 tttcaatgaacctaaaaaatagttttttatttataataatgaccggagggagta 39682754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 51617370 - 51617325
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| | |||||||||||| |||||||||||||| ||||    
T  51617370 atctaaaaagtggatttttggttatattagtgaccggagggtgtat 51617325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 52215976 - 52216021
Alignment:
Q  211 agtgaatctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    ||||||||||||| || | |||||| ||||||||||||||||||||    
T  52215976 agtgaatctaaaatgttgatttttgcttataatagtgaccggaggg 52216021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 39579591 - 39579639
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||||||||||| | |||||| |||||||||||| || |||||||||    
T  39579591 tgaatctaaaaagttgatttttgcttataatagtgatcgaagggagtat 39579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 50626824 - 50626764
Alignment:
Q  143 ggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtc 203  Q
    ||||||| ||| |||||| |||||||||  |||||||||||||| | |||||||| |||||    
T  50626824 ggtcactattataagcaacaaaccactttataggttcattgaataactaatgtatctggtc 50626764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 44587778 - 44587716
Alignment:
Q  143 ggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcat 205  Q
    ||||||| ||| ||||||||||| |||| |||| |||||||||||||| ||||||||||||||    
T  44587778 ggtcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgtggtcat 44587716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 44587736 - 44587778
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgacc 250  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  44587736 ttcaatgaatctaaaaagtagttttttgcttataatagtgacc 44587778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 3098224 - 3098266
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagg 255  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  3098224 tgaatctaaaatgtagatttttgcttataatagtgaccggagg 3098266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 23143530 - 23143480
Alignment:
Q  211 agtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||| ||||||||| | |||||| ||||||||||||||| |||||||||    
T  23143530 agtgaacctaaaaagttgatttttgcttataatagtgaccgaagggagtat 23143480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 23143589 - 23143631
Alignment:
Q  218 ctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    ||||||||| | |||||| ||||||||||||||||||||||||    
T  23143589 ctaaaaagttgatttttgcttataatagtgaccggagggagta 23143631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 23555320 - 23555270
Alignment:
Q  211 agtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||| ||||||||| | |||||| ||||||||||||||| |||||||||    
T  23555320 agtgaacctaaaaagttgatttttgcttataatagtgaccgaagggagtat 23555270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 23555379 - 23555421
Alignment:
Q  218 ctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    ||||||||| | |||||| ||||||||||||||||||||||||    
T  23555379 ctaaaaagttgatttttgcttataatagtgaccggagggagta 23555421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 25270954 - 25270996
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagg 255  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  25270954 tgaatctaaaatgtagatttttgcttataatagtgaccggagg 25270996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 5574211 - 5574256
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  5574211 atctaaaaagtagatttttgcttatattagtgaccggagggtgtat 5574256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 15119877 - 15119918
Alignment:
Q  215 aatctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    ||||||||| |||| |||||| ||||||||||||||||||||    
T  15119877 aatctaaaatgtagatttttgcttataatagtgaccggaggg 15119918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 20218639 - 20218692
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| ||||||||||||||  ||| ||| ||||||||||||| |||||||||||    
T  20218639 ttcaatgaatctaaaaagtgatttcttgcttataatagtgacaggagggagtat 20218692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 38227239 - 38227198
Alignment:
Q  215 aatctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    |||||||||||| |||||||| |||||||| |||||||||||    
T  38227239 aatctaaaaagtggttttttgcttataataatgaccggaggg 38227198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 44587690 - 44587637
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||| ||||||| |||| ||||| |||||||| ||||||||||||||||    
T  44587690 ttcaatgaacctaaaaaatagtattttgcttataataatgaccggagggagtat 44587637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 3121523 - 3121563
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    |||||||| |||| |||||| ||||||||||||||||||||    
T  3121523 atctaaaatgtagatttttgcttataatagtgaccggaggg 3121563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 13333545 - 13333585
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccgga 253  Q
    ||||||||||| |||| |||||| |||||||||||||||||    
T  13333545 tgaatctaaaatgtagatttttgcttataatagtgaccgga 13333585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 20218593 - 20218541
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    |||| |||| |||||||||  ||||||| ||||||||||||| ||||||||||    
T  20218593 ttcaatgaaactaaaaagtgtttttttgcttataatagtgactggagggagta 20218541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 38181858 - 38181906
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||||| ||||    
T  38181858 tgaatgtaaaatgtagttttttgcttataatagtaaccggagggtgtat 38181906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 40363266 - 40363226
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtga 248  Q
    |||| |||| |||||||||||||||||| ||||||||||||    
T  40363266 ttcaatgaacctaaaaagtagttttttgcttataatagtga 40363226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 15057664 - 15057725
Alignment:
Q  145 tcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatt 206  Q
    ||||| ||| ||||||||||| |||| |||| |||||||||||||| |||||||||||||||    
T  15057664 tcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgtggtcatt 15057725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 15057704 - 15057657
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagg 255  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  15057704 ttcaatgaatctaaaaagtagttttttgcttataatagtgatcggagg 15057657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 38636325 - 38636222
Alignment:
Q  155 aagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatttttcagtgaatctaaaaagtagttttttggttataatagtgaccggag 254  Q
    ||||||||||| |||| |||| || ||||||| | |||||||| ||||     |||| |||||||||||||| |||||||| ||||||  ||||| ||||    
T  38636325 aagcaaaaaacaactttttagattgattgaataactaatgtatttggta----ttcaatgaatctaaaaagttgttttttgcttataaatgtgacaggag 38636230  T
Q  255 ggagtatg 262  Q
    ||||||||    
T  38636229 ggagtatg 38636222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 19175686 - 19175735
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatg 262  Q
    |||||||||||||||| |||||| ||||||||||||| |||||| |||||    
T  19175686 tgaatctaaaaagtagatttttgcttataatagtgactggagggtgtatg 19175735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 38834653 - 38834605
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||||||||| ||  |||||| |||||||||||||||||||||||||    
T  38834653 tgaatctaaaaaataaatttttgcttataatagtgaccggagggagtat 38834605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 45115268 - 45115316
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| |||| |||||| |||||||||||||||||||| ||||    
T  45115268 tgaatctaaaatgtagatttttgcttataatagtgaccggagggtgtat 45115316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 8338717 - 8338674
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||    
T  8338717 tgaatctaaaatgtagatttttgcttataatagtgaccggaggg 8338674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 38758398 - 38758445
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    |||| |||||||||  ||||||| ||||||||||||||||||||||||    
T  38758398 tgaacctaaaaagtgtttttttgcttataatagtgaccggagggagta 38758445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 5091763 - 5091816
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||| |||||| ||||||||||| |||||||||||||| || |||||||    
T  5091763 ttcaatgaacctaaaaggtagttttttgtttataatagtgacctgaaggagtat 5091816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 17468191 - 17468244
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||||||||||||| || ||||| || ||||||||||| ||||||||||    
T  17468191 ttcaatgaatctaaaaagtggtattttgcttttaatagtgaccagagggagtat 17468244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 24419580 - 24419527
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| ||||||||||||||  ||||||| ||||||  |||||||||||||||||    
T  24419580 ttcaatgaatctaaaaagttcttttttgcttataaatgtgaccggagggagtat 24419527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 31008298 - 31008253
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  31008298 atctaaaaagtagatttttgcttatattagtgaccggagggtgtat 31008253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 36040244 - 36040293
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatg 262  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| |||||    
T  36040244 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtatg 36040293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 4060272 - 4060312
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    ||||||||||||| |||||| ||||| ||||||||||||||    
T  4060272 atctaaaaagtagatttttgcttatattagtgaccggaggg 4060312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 6156676 - 6156628
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||||||||||| | |||||| |||||||||||| |||| |||||||    
T  6156676 tgaatctaaaaagttgatttttgtttataatagtgatcggaaggagtat 6156628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 14214627 - 14214675
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| ||||||||||  |||||| |||||||||||||||||||| ||||    
T  14214627 tgaacctaaaaagtaagtttttgcttataatagtgaccggagggtgtat 14214675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 28725564 - 28725612
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  28725564 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 28725612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 36040188 - 36040140
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  36040188 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 36040140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 2456674 - 2456726
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    |||| ||||||||||||||||||||||  |||||||||||||| |||||||||    
T  2456674 ttcaatgaatctaaaaagtagttttttacttataatagtgaccagagggagta 2456726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 3967752 - 3967700
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    |||| |||| |||||||||||||||||| |||||||||||| |||||||||||    
T  3967752 ttcaatgaacctaaaaagtagttttttgcttataatagtgatcggagggagta 3967700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 2456383 - 2456329
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccggagggagtatg 262  Q
    |||| |||| ||||||||||| |||||| |||||||||||| |||||||||||||    
T  2456383 ttcaatgaacctaaaaagtagatttttgcttataatagtgatcggagggagtatg 2456329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 34750371 - 34750322
Alignment:
Q  212 gtgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||| ||||||||||| |||||| |||||||||| ||||||||||||||    
T  34750371 gtgaacctaaaaagtagatttttgcttataatagtaaccggagggagtat 34750322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 47535006 - 47534965
Alignment:
Q  219 taaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  47535006 taaaaagtagttttttgcttataatagtgaccggagagagta 47534965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 47708408 - 47708469
Alignment:
Q  145 tcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatt 206  Q
    ||||| ||| ||||||||||| |||| ||| ||||||||||||||| |||||||| ||||||    
T  47708408 tcactattataagcaaaaaactactttttaagttcattgaatgagtgatgtatgttgtcatt 47708469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 3967798 - 3967842
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccgg 252  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||    
T  3967798 ttcaatgaacctaaaaagtagttttttgcttataatagtgaccgg 3967842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 3967712 - 3967763
Alignment:
Q  145 tcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgta 196  Q
    ||||| ||| ||||||||||| |||| ||||||||||||||||||| |||||    
T  3967712 tcactattataagcaaaaaactactttttaggttcattgaatgagtgatgta 3967763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 8127925 - 8127972
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    |||||||||| ||| | |||||| ||||||||||||||||||||||||    
T  8127925 tgaatctaaacagttgatttttgtttataatagtgaccggagggagta 8127972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 3967840 - 3967782
Alignment:
Q  143 ggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtgg 201  Q
    ||||||| ||| ||||||||||| |||| ||||||||||||||| | | ||||||||||    
T  3967840 ggtcactattataagcaaaaaactactttttaggttcattgaataaatgatgtatgtgg 3967782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 28306357 - 28306319
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccg 251  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  28306357 tgaatctaaaatgtagatttttggttataatagtgaccg 28306319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 34750432 - 34750474
Alignment:
Q  219 taaaaagtagttttttgg-ttataatagtgaccggagggagta 260  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  34750432 taaaaagtagtttttttgcttataatagtgaccggagggagta 34750474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 38238885 - 38238930
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  38238885 atctaaaaagtagatttttgcttatattagtgaccggagggtgtat 38238930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 41803762 - 41803721
Alignment:
Q  215 aatctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    ||||||||| |||| ||||| |||||||||||||||||||||    
T  41803762 aatctaaaatgtagattttttgttataatagtgaccggaggg 41803721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 47708437 - 47708396
Alignment:
Q  219 taaaaagtagttttttggttataatagtgaccggagggagta 260  Q
    ||||||||||||||||| |||||||||||| |||| ||||||    
T  47708437 taaaaagtagttttttgcttataatagtgatcggatggagta 47708396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 7701230 - 7701190
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccgga 253  Q
    ||||||||||| |||| |||||| |||||||||||||||||    
T  7701230 tgaatctaaaatgtagatttttgcttataatagtgaccgga 7701190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 10414981 - 10414933
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  10414981 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 10414933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 12274907 - 12274955
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||||||||||||  |||||| |||||||||| ||||||||| ||||    
T  12274907 tgaatctaaaaagtacatttttgcttataatagttaccggagggtgtat 12274955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 25245241 - 25245289
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| || | |||||| |||||||||||||||||||| ||||    
T  25245241 tgaatctaaaatgttgatttttgcttataatagtgaccggagggtgtat 25245289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 34565046 - 34565002
Alignment:
Q  159 aaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtc 203  Q
    |||||||||||| ||||||| ||||||| ||| ||||||||||||    
T  34565046 aaaaaaccactttttaggttaattgaataagtgatgtatgtggtc 34565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 16121063 - 16121112
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatg 262  Q
    |||||||||||||| | |||||| |||||||||||| |||||||||||||    
T  16121063 tgaatctaaaaagttgatttttgcttataatagtgatcggagggagtatg 16121112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 17773602 - 17773647
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  17773602 atctaaaaagtagatttttgcttatattagtgaccggagggtgtat 17773647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 3203713 - 3203665
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| ||||||| | | |||||| |||||||||||||||||||||||||    
T  3203713 tgaacctaaaaaattgatttttgcttataatagtgaccggagggagtat 3203665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 6560699 - 6560651
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  6560699 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 6560651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 8146047 - 8146095
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| ||| ||||||| ||||| |||||||||||||| ||||    
T  8146047 tgaatctaaaatgtaattttttgcttatattagtgaccggagggtgtat 8146095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 31810432 - 31810480
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| ||||    
T  31810432 tgaatctaaaatgtagttttttgcttatattagtgaccggagggtgtat 31810480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 12736372 - 12736423
Alignment:
Q  155 aagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggtcatt 206  Q
    ||||||||||| |||| ||||||||||||||||| | ||||||||| |||||    
T  12736372 aagcaaaaaactactttttaggttcattgaatgattgatgtatgtgatcatt 12736423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 27518413 - 27518456
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||    
T  27518413 tgaatctaaaatgtagatttttgtttataatagtgaccggaggg 27518456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 12736402 - 12736357
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccgga 253  Q
    |||| |||| |||||||||||||||||| |||||||||| ||||||    
T  12736402 ttcaatgaacctaaaaagtagttttttgcttataatagtaaccgga 12736357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 24052921 - 24052966
Alignment:
Q  208 ttcagtgaatctaaaaagtagttttttggttataatagtgaccgga 253  Q
    |||| |||| ||||||||||| |||||| |||||||||||||||||    
T  24052921 ttcaatgaacctaaaaagtagatttttgtttataatagtgaccgga 24052966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 31810376 - 31810327
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatg 262  Q
    ||||||||||| ||||  ||||| |||||||||||||||||||| |||||    
T  31810376 tgaatctaaaatgtagcattttgcttataatagtgaccggagggtgtatg 31810327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 40098799 - 40098754
Alignment:
Q  216 atctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  40098799 atctaaaaagtagatttttgcttatattagtgaccggagggtgtat 40098754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 24820302 - 24820362
Alignment:
Q  142 tggtcactcttacaagcaaaaaaccacttcttaggttcattgaatgagtaatgtatgtggt 202  Q
    |||||||| ||| |||||||||  ||||||||||||||||| ||| | | |||||||||||    
T  24820302 tggtcactattataagcaaaaattcacttcttaggttcattcaataaatgatgtatgtggt 24820362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 31505080 - 31505032
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  31505080 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 31505032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 31505136 - 31505184
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  31505136 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 31505184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 41387860 - 41387900
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccgga 253  Q
    |||||||||||  |||||||||| |||||||||||||||||    
T  41387860 tgaatctaaaatatagttttttgcttataatagtgaccgga 41387900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 5259483 - 5259526
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggaggg 256  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||    
T  5259483 tgaatctaaaatgtagttttttgcttatattagtgaccggaggg 5259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 42910815 - 42910858
Alignment:
Q  218 ctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||||||||||| ||||  |||||||||||||||||||||||||    
T  42910815 ctaaaaagtagtattttacttataatagtgaccggagggagtat 42910858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 1098725 - 1098774
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtatg 262  Q
    |||||||||||| ||   ||||| ||||||||||||||||||||||||||    
T  1098725 tgaatctaaaaaataaacttttgcttataatagtgaccggagggagtatg 1098774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 25792944 - 25792989
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggag 258  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||    
T  25792944 tgaacctaaaaagtaaatttttgcttataatagtgaccggagggag 25792989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 10437735 - 10437783
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| || | |||||| |||||||||||||||||||| ||||    
T  10437735 tgaatctaaaatgttgatttttgcttataatagtgaccggagggtgtat 10437783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 15549423 - 15549471
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    ||||||||||| || | |||||| |||||||||||||||||||| ||||    
T  15549423 tgaatctaaaatgttgatttttgtttataatagtgaccggagggtgtat 15549471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 18033455 - 18033495
Alignment:
Q  215 aatctaaaaagtagttttttggttataatagtgaccggagg 255  Q
    ||||||||| |||| |||||| |||||||||||||||||||    
T  18033455 aatctaaaatgtagatttttgcttataatagtgaccggagg 18033495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 41180311 - 41180359
Alignment:
Q  213 tgaatctaaaaagtagttttttggttataatagtgaccggagggagtat 261  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||    
T  41180311 tgaacctaaaatgtagttttttgcttatattagtgaccggagggtgtat 41180359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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