View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_46 (Length: 252)
Name: NF0950_low_46
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38024552 - 38024776
Alignment:
| Q |
1 |
tacttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatga |
100 |
Q |
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| T |
38024552 |
tacttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaagcatataagagccctttgagttgttgaatacaatgtgtcattatga |
38024651 |
T |
|
| Q |
101 |
ttagaattagaaagaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaaggg-aaaaaat |
199 |
Q |
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| T |
38024652 |
ttagaattagaaagaaataacaacaaacaatctcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaaaaaaaa |
38024751 |
T |
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| Q |
200 |
ctttacaaatctaaatcatgactat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
38024752 |
ttttacaaatctaaatcatgactat |
38024776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38031004 - 38031228
Alignment:
| Q |
1 |
tacttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatga |
100 |
Q |
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||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
38031004 |
tactttatttttatcccaagtaatcattagttttgtaacttaatgtaaatagaagcatataagagccctttgagttgttgaatgtagtgtgtcattatga |
38031103 |
T |
|
| Q |
101 |
ttagaattagaaagaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagg-gaaaaaat |
199 |
Q |
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| T |
38031104 |
ttagaattagaaataaataataacaaacaatctcttcctgaatttgtcattcagatggacaatgctaacccattccaaaggtatgaaaaggaaaaaaaat |
38031203 |
T |
|
| Q |
200 |
ctttacaaatctaaatcatgactat |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
38031204 |
ctttacaaatctaaatcatgactat |
38031228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 50911607 - 50911825
Alignment:
| Q |
7 |
attttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatgattagaa |
106 |
Q |
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||||| ||||||| |||||||||||||||||||||| ||||||| ||||||| |||| |||||| ||||||||| | |||||||||||||||| |
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| T |
50911607 |
atttttatcccaaacaatcattagttttgtaactta--taaaatagaagcatatagaagccctttgaggtgttgaatatatcaagtcattatgattagaa |
50911704 |
T |
|
| Q |
107 |
ttagaaa-----gaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaaaaaatct |
201 |
Q |
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|| |||| |||||| |||| ||||| |||| ||||| ||||| ||||||||||||| ||||||||||||||| || |||||| |||||||| ||| |
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| T |
50911705 |
ttggaaataaagtaaataataacatacaatctcttcctgaaattgtccttcagatggacaatgctaacccattccaaaggcaggaaaggggaaaaattct |
50911804 |
T |
|
| Q |
202 |
ttacaaatctaaatcatgact |
222 |
Q |
| |
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||||||||||||||||||||| |
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| T |
50911805 |
ttacaaatctaaatcatgact |
50911825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 213
Target Start/End: Original strand, 38036513 - 38036685
Alignment:
| Q |
46 |
taaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatgattagaattagaaagaaataacaacaaacaatgtcttgc----tga |
141 |
Q |
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|||||||| ||||||| || || |||||||||||||| | | | |||||||||||| ||||||| ||||| | |||||| ||| | || | ||| |
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| T |
38036513 |
taaatagaagcatataggatccaattgagttgttgaatgtattctttcattatgattatgattagaatgaaattataacaaataatttgttcctgaatga |
38036612 |
T |
|
| Q |
142 |
atttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaatctaa |
213 |
Q |
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||||||| ||||||||||||| ||||| |||||||| |||||||||| | || ||||||||||||||||||| |
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| T |
38036613 |
atttgtcattcagatggacaattctaacacattccaaaggtaggaaaatgaaataaaatctttacaaatctaa |
38036685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 21606976 - 21607197
Alignment:
| Q |
1 |
tacttaattttcatcccaagcaatcattagttttgtaacttaatgtaaatagaggcatataagagccgtttgagttgttgaatacaatgtgtcattatga |
100 |
Q |
| |
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||||| ||||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
21606976 |
tactttatttttatcccaagtaatcattagttttgtaactta---taaatagaagcatataagagccctttgagttgttgaatgtagtgtgtcattatga |
21607072 |
T |
|
| Q |
101 |
ttagaattagaaagaaataacaacaaacaatgtcttgctgaatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagg-gaaaaaat |
199 |
Q |
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||||||||||||| |||||| |||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||| ||||||| |
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| T |
21607073 |
ttagaattagaaataaataataacaaacaatctcttcctgaatttgtcattcagatggacaatgctaacccattccaaaggtatgaaaaggaaaaaaaat |
21607172 |
T |
|
| Q |
200 |
ctttacaaatctaaatcatgactat |
224 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
21607173 |
ctttacaaatctaaatcatgactat |
21607197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 21604573 - 21604657
Alignment:
| Q |
141 |
aatttgtctttcagatggacaaggctaacccattccaatggtaggaaaagggaa-aaaatctttacaaatctaaatcatgactat |
224 |
Q |
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|||||||| || | |||||||| ||||||||||||| ||||| |||| | || ||||||| ||||||||||||| |||||||| |
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| T |
21604573 |
aatttgtcatttaaatggacaattataacccattccaaaggtagaaaaatgaaacaaaatctatacaaatctaaatgatgactat |
21604657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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