View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_47 (Length: 251)
Name: NF0950_low_47
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_47 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 34763428 - 34763207
Alignment:
| Q |
30 |
aagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763428 |
aagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcg |
34763329 |
T |
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| Q |
130 |
tagagggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaaggagcaaatcaagggtct |
229 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34763328 |
tagaaggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaaggaacaaatcaagggtct |
34763229 |
T |
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| Q |
230 |
tgttgtggtgagtttcttttct |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
34763228 |
tgttgtggtgagtttcttttct |
34763207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 247
Target Start/End: Original strand, 34780684 - 34780901
Alignment:
| Q |
30 |
aagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780684 |
aagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcg |
34780783 |
T |
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| Q |
130 |
tagagggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaaggagcaaatcaagggtct |
229 |
Q |
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| T |
34780784 |
tagatggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaaggaacaaatcaagggtct |
34780883 |
T |
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| Q |
230 |
tgttgtggtgagtttctt |
247 |
Q |
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| T |
34780884 |
tgttgtggtaagtttctt |
34780901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 34755452 - 34755238
Alignment:
| Q |
30 |
aagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatggagaaatcg |
129 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755452 |
aagagaattgacgagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaaaaaatggagaaatca |
34755353 |
T |
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| Q |
130 |
tagagggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaaggagcaaatcaagggtct |
229 |
Q |
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||||||||||||||| ||| ||||||||||| ||||||||||||| ||| || |||||||||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
34755352 |
tagagggcgagcagagtgtagtttttcttgatactttgcttgaatatgctcaggatgagaccatggacatcaaaattaccaaggaacaaatcaagggtct |
34755253 |
T |
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| Q |
230 |
tgttgtggtgagttt |
244 |
Q |
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||||||||| ||||| |
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| T |
34755252 |
tgttgtggtaagttt |
34755238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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