View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0950_low_48 (Length: 250)

Name: NF0950_low_48
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0950_low_48
NF0950_low_48
[»] chr5 (37 HSPs)
chr5 (23-250)||(40452139-40452366)
chr5 (115-190)||(42646855-42646930)
chr5 (112-189)||(12425508-12425585)
chr5 (112-195)||(9202798-9202881)
chr5 (112-190)||(39105401-39105479)
chr5 (73-138)||(34160629-34160694)
chr5 (112-179)||(706400-706467)
chr5 (115-190)||(36796761-36796836)
chr5 (115-190)||(42583089-42583164)
chr5 (114-180)||(35135727-35135793)
chr5 (176-221)||(3520648-3520693)
chr5 (116-185)||(14932231-14932299)
chr5 (112-165)||(39248037-39248090)
chr5 (112-180)||(1465084-1465152)
chr5 (112-187)||(6593237-6593311)
chr5 (176-219)||(16457935-16457978)
chr5 (148-187)||(29845493-29845532)
chr5 (121-176)||(29935418-29935473)
chr5 (120-179)||(35446000-35446059)
chr5 (112-187)||(42569038-42569113)
chr5 (117-190)||(1619034-1619105)
chr5 (115-165)||(4014504-4014554)
chr5 (175-241)||(35445778-35445844)
chr5 (119-180)||(3566383-3566444)
chr5 (113-190)||(4855636-4855713)
chr5 (177-250)||(9107162-9107235)
chr5 (176-241)||(10640024-10640089)
chr5 (176-221)||(11064737-11064782)
chr5 (192-241)||(12425660-12425709)
chr5 (184-241)||(15015922-15015979)
chr5 (176-241)||(16937817-16937882)
chr5 (113-190)||(34736582-34736658)
chr5 (112-165)||(37112338-37112391)
chr5 (176-221)||(39248169-39248214)
chr5 (112-165)||(40048360-40048413)
chr5 (145-200)||(42569601-42569653)
chr5 (73-117)||(7319165-7319209)
[»] chr4 (40 HSPs)
chr4 (73-195)||(25885757-25885879)
chr4 (115-190)||(3155543-3155618)
chr4 (73-187)||(27043888-27044002)
chr4 (112-241)||(49003976-49004103)
chr4 (125-190)||(1407906-1407971)
chr4 (118-190)||(49219082-49219154)
chr4 (177-221)||(49940121-49940165)
chr4 (126-190)||(51630062-51630126)
chr4 (112-190)||(24160927-24161005)
chr4 (113-190)||(40174503-40174578)
chr4 (112-165)||(7601696-7601749)
chr4 (176-241)||(21731590-21731655)
chr4 (176-241)||(54426114-54426179)
chr4 (176-240)||(1706693-1706757)
chr4 (138-190)||(34213641-34213692)
chr4 (120-195)||(3070023-3070098)
chr4 (170-241)||(18815088-18815159)
chr4 (126-189)||(39137488-39137551)
chr4 (181-220)||(50681044-50681083)
chr4 (143-190)||(52746895-52746942)
chr4 (116-190)||(17884009-17884083)
chr4 (112-186)||(23503496-23503570)
chr4 (112-154)||(25487636-25487678)
chr4 (113-187)||(26520287-26520361)
chr4 (144-186)||(37864011-37864053)
chr4 (115-165)||(49803151-49803201)
chr4 (113-187)||(54392877-54392950)
chr4 (176-213)||(4071948-4071985)
chr4 (176-241)||(17822799-17822864)
chr4 (126-187)||(22666439-22666500)
chr4 (176-221)||(39603124-39603169)
chr4 (176-241)||(39691083-39691148)
chr4 (113-190)||(56480286-56480363)
chr4 (118-190)||(3175894-3175966)
chr4 (73-133)||(4212814-4212874)
chr4 (126-182)||(22661960-22662016)
chr4 (126-190)||(23459579-23459643)
chr4 (126-166)||(29912900-29912940)
chr4 (182-250)||(39137581-39137649)
chr4 (112-160)||(44138496-44138544)
[»] chr1 (57 HSPs)
chr1 (73-213)||(36070147-36070288)
chr1 (126-190)||(9656601-9656665)
chr1 (73-178)||(34619445-34619551)
chr1 (176-241)||(2295167-2295232)
chr1 (117-190)||(49517012-49517085)
chr1 (73-195)||(33527197-33527320)
chr1 (116-190)||(9572163-9572237)
chr1 (73-190)||(2294809-2294926)
chr1 (176-241)||(29904822-29904887)
chr1 (126-187)||(37769718-37769779)
chr1 (117-186)||(38578469-38578538)
chr1 (126-190)||(24915106-24915170)
chr1 (129-188)||(39658537-39658596)
chr1 (111-165)||(6976884-6976938)
chr1 (128-190)||(29128353-29128415)
chr1 (116-178)||(37841939-37842001)
chr1 (112-241)||(38116192-38116318)
chr1 (130-195)||(46423334-46423397)
chr1 (73-190)||(1432414-1432530)
chr1 (112-161)||(3887716-3887765)
chr1 (114-179)||(4256108-4256173)
chr1 (152-213)||(11217977-11218038)
chr1 (73-190)||(37842410-37842527)
chr1 (176-221)||(38001666-38001711)
chr1 (117-190)||(49557083-49557156)
chr1 (176-240)||(37517101-37517165)
chr1 (175-250)||(3233940-3234015)
chr1 (112-175)||(7028229-7028292)
chr1 (121-187)||(30191937-30192004)
chr1 (143-190)||(33204443-33204490)
chr1 (114-188)||(15565889-15565963)
chr1 (112-182)||(15687136-15687206)
chr1 (187-241)||(33204328-33204382)
chr1 (148-190)||(37295773-37295815)
chr1 (176-250)||(49938818-49938892)
chr1 (112-190)||(52286615-52286693)
chr1 (87-136)||(488913-488962)
chr1 (176-221)||(6557043-6557088)
chr1 (176-213)||(9572063-9572100)
chr1 (112-190)||(15361648-15361728)
chr1 (119-179)||(38170758-38170819)
chr1 (176-241)||(38247398-38247463)
chr1 (184-241)||(39976144-39976201)
chr1 (176-213)||(43371854-43371891)
chr1 (176-213)||(49692015-49692052)
chr1 (113-190)||(49888705-49888782)
chr1 (177-250)||(50644180-50644253)
chr1 (73-117)||(473038-473082)
chr1 (113-165)||(4445646-4445698)
chr1 (112-160)||(4549803-4549851)
chr1 (103-155)||(4768914-4768966)
chr1 (145-193)||(10809315-10809363)
chr1 (178-250)||(37617390-37617462)
chr1 (90-182)||(43722378-43722470)
chr1 (127-195)||(48064261-48064329)
chr1 (114-190)||(48830131-48830207)
chr1 (74-122)||(50725027-50725075)
[»] chr7 (35 HSPs)
chr7 (82-190)||(39907710-39907818)
chr7 (126-197)||(34083573-34083644)
chr7 (79-190)||(12110263-12110375)
chr7 (126-190)||(40689041-40689105)
chr7 (114-190)||(49060479-49060555)
chr7 (108-165)||(8960707-8960764)
chr7 (176-213)||(20526891-20526928)
chr7 (126-187)||(30180002-30180063)
chr7 (178-241)||(27863659-27863722)
chr7 (113-188)||(36874022-36874097)
chr7 (113-190)||(1432019-1432099)
chr7 (108-190)||(5628621-5628703)
chr7 (79-190)||(22296283-22296397)
chr7 (112-190)||(27548200-27548278)
chr7 (112-186)||(33673015-33673088)
chr7 (112-190)||(37832195-37832272)
chr7 (192-241)||(39907888-39907937)
chr7 (126-190)||(22283799-22283862)
chr7 (113-165)||(27121666-27121718)
chr7 (117-189)||(47177578-47177650)
chr7 (106-188)||(7453454-7453537)
chr7 (142-213)||(13960883-13960953)
chr7 (132-190)||(20526403-20526461)
chr7 (175-213)||(21568457-21568495)
chr7 (115-188)||(6824858-6824931)
chr7 (176-241)||(19302497-19302562)
chr7 (176-213)||(20526517-20526554)
chr7 (73-106)||(33128629-33128662)
chr7 (176-241)||(33601344-33601409)
chr7 (112-188)||(3610797-3610873)
chr7 (116-160)||(3968280-3968324)
chr7 (117-165)||(25599879-25599927)
chr7 (114-190)||(30496643-30496719)
chr7 (113-177)||(42656453-42656517)
chr7 (117-165)||(43152982-43153030)
[»] chr6 (23 HSPs)
chr6 (108-187)||(6654548-6654627)
chr6 (112-190)||(9093611-9093689)
chr6 (98-190)||(4006637-4006729)
chr6 (112-190)||(29274284-29274362)
chr6 (119-190)||(2735013-2735084)
chr6 (112-213)||(10452392-10452493)
chr6 (113-187)||(24476540-24476614)
chr6 (146-211)||(7485102-7485167)
chr6 (112-165)||(9559621-9559674)
chr6 (147-195)||(9604821-9604869)
chr6 (121-177)||(658518-658576)
chr6 (112-190)||(11340680-11340758)
chr6 (114-180)||(24836264-24836330)
chr6 (112-177)||(264308-264373)
chr6 (112-177)||(507157-507222)
chr6 (121-190)||(1402942-1403011)
chr6 (134-187)||(3785758-3785811)
chr6 (143-188)||(29296350-29296395)
chr6 (113-182)||(32206083-32206152)
chr6 (113-165)||(430456-430508)
chr6 (126-190)||(769090-769154)
chr6 (116-160)||(10645411-10645455)
chr6 (114-190)||(20671920-20671996)
[»] chr3 (36 HSPs)
chr3 (73-188)||(42747834-42747949)
chr3 (97-190)||(1395593-1395686)
chr3 (120-189)||(30956682-30956751)
chr3 (120-189)||(30972494-30972563)
chr3 (117-190)||(44061078-44061151)
chr3 (93-165)||(2128331-2128403)
chr3 (176-240)||(39980800-39980864)
chr3 (176-241)||(31365122-31365187)
chr3 (116-213)||(48397587-48397684)
chr3 (120-180)||(583991-584051)
chr3 (126-190)||(2719420-2719483)
chr3 (181-241)||(18405765-18405825)
chr3 (126-190)||(25447299-25447363)
chr3 (73-117)||(30956780-30956824)
chr3 (73-117)||(30972592-30972636)
chr3 (126-190)||(33405222-33405286)
chr3 (108-187)||(402600-402678)
chr3 (112-190)||(46886747-46886823)
chr3 (118-189)||(52618946-52619017)
chr3 (120-186)||(35959515-35959581)
chr3 (117-195)||(51510243-51510321)
chr3 (177-250)||(584118-584191)
chr3 (176-213)||(3776353-3776390)
chr3 (176-221)||(21367738-21367783)
chr3 (121-190)||(23952161-23952230)
chr3 (176-241)||(24085272-24085337)
chr3 (176-237)||(26878271-26878332)
chr3 (176-241)||(37689300-37689365)
chr3 (112-189)||(43079679-43079756)
chr3 (113-190)||(44014218-44014295)
chr3 (176-213)||(44014761-44014798)
chr3 (114-190)||(21367611-21367682)
chr3 (143-195)||(32555031-32555083)
chr3 (113-153)||(34759619-34759659)
chr3 (114-190)||(37788800-37788875)
chr3 (114-190)||(48364934-48365010)
[»] chr8 (44 HSPs)
chr8 (112-190)||(10114427-10114504)
chr8 (79-156)||(1929955-1930032)
chr8 (74-190)||(7514476-7514593)
chr8 (90-172)||(37152963-37153045)
chr8 (116-189)||(16210942-16211015)
chr8 (176-241)||(35534547-35534612)
chr8 (114-186)||(4558737-4558809)
chr8 (115-190)||(7918828-7918903)
chr8 (103-182)||(36337963-36338042)
chr8 (116-190)||(1470911-1470985)
chr8 (143-213)||(6526215-6526285)
chr8 (126-180)||(10758321-10758375)
chr8 (176-238)||(26771336-26771398)
chr8 (175-221)||(28763438-28763484)
chr8 (112-190)||(28769394-28769472)
chr8 (112-165)||(26215433-26215486)
chr8 (176-241)||(30251388-30251453)
chr8 (113-190)||(42597339-42597416)
chr8 (118-190)||(26820142-26820214)
chr8 (73-117)||(29819034-29819078)
chr8 (143-190)||(773297-773344)
chr8 (143-190)||(778357-778404)
chr8 (143-190)||(787791-787838)
chr8 (73-116)||(1058229-1058272)
chr8 (113-188)||(3936787-3936862)
chr8 (108-154)||(2698726-2698772)
chr8 (173-239)||(35749506-35749572)
chr8 (176-241)||(1058011-1058076)
chr8 (120-189)||(1058130-1058199)
chr8 (112-189)||(1112790-1112867)
chr8 (117-178)||(3537098-3537159)
chr8 (176-221)||(10758211-10758256)
chr8 (192-241)||(12497006-12497055)
chr8 (120-161)||(12976158-12976199)
chr8 (176-213)||(16162830-16162867)
chr8 (113-190)||(16163333-16163410)
chr8 (113-190)||(27049306-27049382)
chr8 (114-190)||(7646145-7646221)
chr8 (176-208)||(10120827-10120859)
chr8 (128-188)||(29168949-29169009)
chr8 (126-190)||(35374428-35374492)
chr8 (112-188)||(37353306-37353381)
chr8 (73-117)||(40981002-40981046)
chr8 (181-241)||(43717868-43717928)
[»] chr2 (39 HSPs)
chr2 (112-187)||(2416250-2416325)
chr2 (117-206)||(39567845-39567934)
chr2 (73-190)||(4026713-4026832)
chr2 (79-190)||(18066032-18066143)
chr2 (112-190)||(43199351-43199429)
chr2 (114-190)||(42457887-42457963)
chr2 (112-195)||(1646951-1647034)
chr2 (116-195)||(9395071-9395150)
chr2 (112-187)||(25609733-25609808)
chr2 (112-190)||(3102630-3102708)
chr2 (112-165)||(7043804-7043855)
chr2 (176-250)||(27317450-27317524)
chr2 (175-241)||(36534838-36534904)
chr2 (119-189)||(42907303-42907373)
chr2 (112-165)||(3611163-3611216)
chr2 (112-189)||(5133709-5133786)
chr2 (176-241)||(7928232-7928297)
chr2 (176-241)||(42659145-42659210)
chr2 (112-195)||(39621890-39621971)
chr2 (120-167)||(3932295-3932342)
chr2 (112-190)||(2142590-2142668)
chr2 (112-190)||(3673744-3673822)
chr2 (112-190)||(8017372-8017449)
chr2 (120-190)||(12464528-12464598)
chr2 (112-190)||(15377702-15377780)
chr2 (112-190)||(17952756-17952834)
chr2 (176-250)||(20952426-20952500)
chr2 (184-250)||(30331830-30331896)
chr2 (175-213)||(32837392-32837430)
chr2 (143-176)||(12313242-12313275)
chr2 (120-165)||(15305602-15305647)
chr2 (176-241)||(15757592-15757657)
chr2 (117-162)||(26143724-26143769)
chr2 (112-186)||(39341144-39341220)
chr2 (73-117)||(1633700-1633744)
chr2 (135-195)||(10494628-10494688)
chr2 (177-221)||(31744370-31744414)
chr2 (112-156)||(40682463-40682506)
chr2 (138-186)||(43199852-43199900)
[»] scaffold0019 (1 HSPs)
scaffold0019 (112-165)||(104214-104267)
[»] scaffold0549 (2 HSPs)
scaffold0549 (112-190)||(1779-1857)
scaffold0549 (112-190)||(3869-3947)
[»] scaffold0024 (2 HSPs)
scaffold0024 (113-175)||(21348-21410)
scaffold0024 (112-190)||(27513-27591)
[»] scaffold0018 (1 HSPs)
scaffold0018 (144-189)||(178381-178426)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 40452139 - 40452366
Alignment:
Q  23 tcatcatccatgagtaaaccaacaaaagcaaatattcaggtttaaggctagtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtata 122  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40452139 tcatcattcatgagtaaaccaacaaaagcaaatattcaggtttaaggctagtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtata 40452238  T
Q  123 agatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctcacacaacttatt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40452239 agatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctcacacaacttatt 40452338  T
Q  223 gcagtatataagctcaaatttgtcaatc 250  Q
    |||||||||||||||| || ||||||||    
T  40452339 gcagtatataagctcatatatgtcaatc 40452366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 42646855 - 42646930
Alignment:
Q  115 tatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||||||| |||| ||||  ||||||| |||||||||| |||| |||||||||||||| |||||||||    
T  42646855 tatgtataagatatttttataacaaaggataaaattaagttaaattgtttttgtttaagctataaggtgttttcat 42646930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 12425508 - 12425585
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    ||||||||||||  ||||| ||||| |||  |||||||||||||||||| |||| || ||||||||||||||||||||    
T  12425508 gcttatgtataaactatttatatagtaaaagataaaataaagttaaattgttttcgtataagctataagctgttttca 12425585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 9202881 - 9202798
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    |||||| |||||| ||||||| |||||||  |||||||||||||||||| ||||  | ||||| ||||||||||||||| ||||    
T  9202881 gcttatatataagctatttctgtagcaaaagataaaataaagttaaattgttttcatataagcaataagctgttttcataagtt 9202798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 39105401 - 39105479
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||| |||||||||||| ||  || |||| |||||||||| |||| || |||||||||| ||||||||||    
T  39105401 gcttatgtataagctatttctatagctaaatatgaaatgaagttaaattgttttcgtataagctataatctgttttcat 39105479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 34160629 - 34160694
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagca 138  Q
    ||||| || ||||||| |||||||||||| |||| ||  |||||||||||||||||||||||||||    
T  34160629 gtttggattaacagctgatttgcagcttaaagcacaaatgcttatgtataagatatttctatagca 34160694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 706400 - 706467
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataa 179  Q
    ||||||||||||| ||||||||||| |||  |||||||| |||||||||||| | ||||||| |||||    
T  706400 gcttatgtataagctatttctatagtaaaagataaaatatagttaaattattcttgtttaagatataa 706467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 36796836 - 36796761
Alignment:
Q  115 tatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||| |||||||  | |||| |||||||||| |||||||||||||    |||||||||||||||||||||    
T  36796836 tatgtataagttatttctgcaacaaaaaataaaataaggttaaattattttcacataagctataagctgttttcat 36796761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 42583089 - 42583164
Alignment:
Q  115 tatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||| |||||||||| ||||  || ||||||||||||||| |||| || ||||  |||||||||||||||    
T  42583089 tatgtataaggtatttctataacaaaagatgaaataaagttaaattgttttcgtgtaagggataagctgttttcat 42583164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 35135793 - 35135727
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataag 180  Q
    |||||||||||||||||||||| ||||  |||||||||||| ||| ||||||  | |||||||||||    
T  35135793 ttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataag 35135727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 3520648 - 3520693
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  3520648 ataagatgttttcataagttctcccaaacagtctcacacaacttat 3520693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 14932231 - 14932299
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtt 185  Q
    ||||||||  ||||| |||||||||  |||||||||||||||||| |||| || ||||||||||||||||    
T  14932231 atgtataatctatttttatagcaaaagataaaataaagttaaattgtttt-gtataagctataagctgtt 14932299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 39248037 - 39248090
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||| ||| ||||||||||||||||| ||||||||| ||||||| ||||    
T  39248037 gcttatgtaaaagctatttctatagcaaatactaaaataaatttaaattgtttt 39248090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 1465152 - 1465084
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataag 180  Q
    ||||||||||||| ||||||||||||| |  |||||||||||||||||   ||| || |||||||||||    
T  1465152 gcttatgtataagctatttctatagcataggataaaataaagttaaatcgcttttgtgtaagctataag 1465084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 6593237 - 6593311
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    ||||||||||||   ||||||||| ||||  ||||||||||||||||||||| | || || |||||||||||||||    
T  6593237 gcttatgtataaacaatttctataacaaaagataaaataaagttaaattattct-gtataggctataagctgtttt 6593311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 16457978 - 16457935
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaactt 219  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||    
T  16457978 ataagctgttttcataagttctcccaaacagtctcacaaaactt 16457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 29845532 - 29845493
Alignment:
Q  148 ataaagttaaattattttggtttaagctataagctgtttt 187  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  29845532 ataaagttatattattttggttcaagctataagctgtttt 29845493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 29935473 - 29935418
Alignment:
Q  121 taagatatttctatagcaaataataaaataaagttaaattattttggtttaagcta 176  Q
    |||| ||||||| ||||||| | |||||||||||||||||||||| || |||||||    
T  29935473 taagctatttctttagcaaaaagtaaaataaagttaaattatttttgtataagcta 29935418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 35446000 - 35446059
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataa 179  Q
    ||||| ||||| |||||||||| |||||||||||||||||| |||| || || |||||||    
T  35446000 ataagctatttttatagcaaatgataaaataaagttaaattgtttttgtatacgctataa 35446059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 42569113 - 42569038
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    ||||||| | ||| |||||||||||||||  ||||||||||||  |||| |||| || |||||||||| |||||||    
T  42569113 gcttatgaaaaagctatttctatagcaaaagataaaataaagtctaattgttttcgtataagctataatctgtttt 42569038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 1619034 - 1619105
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||| |||||||| | |||| |||||  |||||||||||| |||  || |||||||||||||||||||||    
T  1619034 tgtataagctatttctaaaacaaaaaataa--taaagttaaattctttccgtataagctataagctgttttcat 1619105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 4014554 - 4014504
Alignment:
Q  115 tatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    |||||||||| |||||||||||||||  |||||||||||||| ||| ||||    
T  4014554 tatgtataagctatttctatagcaaaagataaaataaagttagattgtttt 4014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 35445844 - 35445778
Alignment:
Q  175 tataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||||||||||||| | |||| ||||| ||||||||| |||||||  ||||| |||| |||||||    
T  35445844 tataagctgttttcataaattctgtcaaagagtctcacaaaacttatgtcagtagataaactcaaat 35445778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 3566444 - 3566383
Alignment:
Q  119 tataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataag 180  Q
    |||||| |||||||||| | ||  | ||||||||||||||||||||| || |||||||||||    
T  3566444 tataagctatttctatacccaaagagaaaataaagttaaattatttttgtataagctataag 3566383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 4855636 - 4855713
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||| || ||||| |||| |||| ||||||||||||||||||| || |  | |||| |||||| |||||||||    
T  4855636 cttatgtattagctatttttataacaaaaaataaaataaagttaaattgttatcatataagttataagttgttttcat 4855713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 9107162 - 9107235
Alignment:
Q  177 taagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    |||||||||||||| ||||||| |||||| ||||||| |||||||  || || |||| |||||||  |||||||    
T  9107162 taagctgttttcatgagttctcccaaacattctcacaaaacttatgtcactagataaactcaaataagtcaatc 9107235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 10640024 - 10640089
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||| ||||||| |||||| | ||||| |||||||  ||||| |||| |||||||    
T  10640024 ataagctgttttcataagttctcccaaacaatatcacaaaacttatgtcagtagataaactcaaat 10640089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 11064737 - 11064782
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    ||||||| ||||||| |||||||||||||| ||||||| |||||||    
T  11064737 ataagctattttcataagttctctcaaacaatctcacaaaacttat 11064782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 12425660 - 12425709
Alignment:
Q  192 agttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||| |||||||||||||| |||||||  ||||| ||||||||||||    
T  12425660 agttctcccaaacagtctcacaaaacttatgacagtagataagctcaaat 12425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 15015922 - 15015979
Alignment:
Q  184 ttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||| ||||||| |||||||||||||| | |||||  ||||| ||||||||||||    
T  15015922 ttttcataagttctcccaaacagtctcacaaagcttatgtcagtagataagctcaaat 15015979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 16937882 - 16937817
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||| ||||||  |||||| ||||||| |||||||   |||| ||||||||||||    
T  16937882 ataagctgttttcataagttcttccaaacactctcacaaaacttatgctagtagataagctcaaat 16937817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 34736658 - 34736582
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| ||||| |||||||||||||||  | ||| ||||| ||||||||||| || |||||||||| ||||| ||||    
T  34736658 cttatgcataagctatttctatagcaaaagagaaa-taaagctaaattatttttgtataagctataaactgttatcat 34736582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 37112391 - 37112338
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||| |||||||| ||||||  |||||| ||||||||||| ||||    
T  37112391 gcttatgtataagctatttctacagcaaaagataaaacaaagttaaattgtttt 37112338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 39248169 - 39248214
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    |||||||||||| || ||||||| |||||||||||||| |||||||    
T  39248169 ataagctgtttttataagttctcccaaacagtctcacaaaacttat 39248214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 40048413 - 40048360
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||| | |||||||| ||||  |||||||||||||| ||||||||    
T  40048413 gcttatgtataagttgtttctataacaaaagataaaataaagttatattatttt 40048360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 42569653 - 42569601
Alignment:
Q  145 aaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctc 200  Q
    |||||||||||||||| ||||   ||||| |||||||||||||||| |||||||||    
T  42569653 aaaataaagttaaattgtttt---ttaagttataagctgttttcataagttctctc 42569601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 7319209 - 7319165
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttat 117  Q
    ||||||||||||||||||||| ||||||| |||| ||| ||||||    
T  7319209 gtttgaataaacagcttatttacagcttatagcacaagcgcttat 7319165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 25885757 - 25885879
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaa 172  Q
    ||||| ||||||| |||||||||||||||||||  ||   ||||||||| || | |||||||||||||  |||||||||||||||||| |||| || |||    
T  25885757 gtttggataaacaacttatttgcagcttacagcgcaaacacttatgtattagctctttctatagcaaaagataaaataaagttaaattgttttcgtgtaa 25885856  T
Q  173 gctataagctgttttcatcagtt 195  Q
    |||||||| ||||||||| ||||    
T  25885857 gctataagttgttttcataagtt 25885879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 3155543 - 3155618
Alignment:
Q  115 tatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||| |||||||||||||||  |||||||||||||||||| |||| ||  |||||| |||||||||||||    
T  3155543 tatgtataagctatttctatagcaaaagataaaataaagttaaattgtttttgtacaagctacaagctgttttcat 3155618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 27044002 - 27043888
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaa 172  Q
    ||||| ||||||| ||||| | ||||||| ||||  || ||||||||||||| || || |||| ||||  |||||||||||||||||| |||| || |||    
T  27044002 gtttggataaacaacttatctacagcttatagcactagcgcttatgtataaggtacttatataacaaaggataaaataaagttaaattgttttcgtataa 27043903  T
Q  173 gctataagctgtttt 187  Q
    |||||||| ||||||    
T  27043902 gctataagatgtttt 27043888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 49004103 - 49003976
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctca 211  Q
    |||||||||||||  ||||||||||||||  ||||||||  |||||||| |||| || | ||||||||  | ||||||| |||||||||||| |||||||    
T  49004103 gcttatgtataagcaatttctatagcaaaagataaaata--gttaaattgttttcgtattagctataacttattttcataagttctctcaaatagtctca 49004006  T
Q  212 cacaacttattgcagtatataagctcaaat 241  Q
    || ||||||    |||| ||||||||||||    
T  49004005 caaaacttaagctagtagataagctcaaat 49003976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 1407906 - 1407971
Alignment:
Q  125 atatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||||||||||||||||| ||||||||| |||| || ||||||  |||||||||||||    
T  1407906 atatttctatagcaaataataaaatagagttaaattgtttttgtgtaagctgcaagctgttttcat 1407971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 49219082 - 49219154
Alignment:
Q  118 gtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||| |||||||||| ||||  |||||||||||| ||||||||||  | ||||||||||| |||||||||    
T  49219082 gtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcat 49219154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 49940165 - 49940121
Alignment:
Q  177 taagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  49940165 taagctgttttcataagttctctcaaacagtctcacaaaacttat 49940121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 51630062 - 51630126
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||| |||||||||  |||||||||||||||||| ||||| | ||||||||||||| |||||||    
T  51630062 tatttatatagcaaaagataaaataaagttaaattgttttgatataagctataagctattttcat 51630126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 24160927 - 24161005
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||| |||||||||| ||||  ||||||| |||||||||||||||  | || |||||||| ||| |||||    
T  24160927 gcttatgtataagctatttctataacaaaggataaaatcaagttaaattattttcatgtaggctataagttgtgttcat 24161005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 40174503 - 40174578
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||| |||||  |||||||| |||||| |||||||||||| ||||  |  ||||||||||||||||||||    
T  40174503 cttatgtataagctattt--atagcaaaaaataaattaaagttaaattgttttcataaaagctataagctgttttcat 40174578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 7601696 - 7601749
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||| |||| ||||||||||  |||||||||||||||||| ||||    
T  7601696 gcttatgtataagctattcctatagcaaaggataaaataaagttaaattgtttt 7601749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 21731655 - 21731590
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||| ||||||| |||||| ||||||| |||||||  ||||| ||| ||||||||    
T  21731655 ataagctgttttcataagttctcccaaacaatctcacaaaacttatgtcagtagatatgctcaaat 21731590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 54426114 - 54426179
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||| | ||||||| ||| |||||||||| |||||||  ||||| ||||||||||||    
T  54426114 ataagctgttttcctaagttctcccaagcagtctcacaaaacttatgccagtagataagctcaaat 54426179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 1706693 - 1706757
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaa 240  Q
    ||||||||||||||| | ||||||||||| |||||||| |||||||  ||||| |||| ||||||    
T  1706693 ataagctgttttcataatttctctcaaaccgtctcacaaaacttatgtcagtagataaactcaaa 1706757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 34213692 - 34213641
Alignment:
Q  138 aaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||||||||||    
T  34213692 aaatcataaaataaagttaaatcattttg-tataagctataagctgttttcat 34213641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 3070098 - 3070023
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    ||||| ||||| |||| |||||||| |||||||||||| || |||||||  | |||| ||||||||||||| ||||    
T  3070098 ataagttatttttataacaaataatcaaataaagttaacttgttttggtacatgctacaagctgttttcataagtt 3070023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 18815088 - 18815159
Alignment:
Q  170 taagctataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||| ||||||||| || || |||||||||||||||||||||| |||||||   ||||  |||||||||||    
T  18815088 taagccataagctgtctttattagttctctcaaacagtctcacaaaacttatgctagtaggtaagctcaaat 18815159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 39137488 - 39137551
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    ||||||||||||| |  |||||||||| || ||||||||| || |||||||||||| |||||||    
T  39137488 tatttctatagcataggataaaataaattttaattatttttgtataagctataagccgttttca 39137551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 50681083 - 50681044
Alignment:
Q  181 ctgttttcatcagttctctcaaacagtctcacacaactta 220  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  50681083 ctgttttcataagttctctcaaacagtctcacaaaactta 50681044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 52746942 - 52746895
Alignment:
Q  143 ataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||||||||| |||| || ||||| |||||||||||||||    
T  52746942 ataaaataaagttaaattgtttttgtgtaagccataagctgttttcat 52746895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 17884009 - 17884083
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| |||| |||||||||| ||||  |||||||||||||||||| |||| || |||| ||| || |||||||||    
T  17884009 atgtgtaagctatttctataacaaaagataaaataaagttaaattgtttttgtataagttatcagttgttttcat 17884083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 23503496 - 23503570
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttt 186  Q
    ||||||||||||  || ||||||| ||||  ||||||||||||||||||||||| ||  |||  |||||||||||    
T  23503496 gcttatgtataatctaattctataacaaaatataaaataaagttaaattatttttgtagaagacataagctgttt 23503570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 25487678 - 25487636
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagt 154  Q
    ||||||||||||| |||||||||| |||| |||||||||||||    
T  25487678 gcttatgtataagctatttctataacaaaaaataaaataaagt 25487636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 26520361 - 26520287
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    |||||||||||  | |||||||| ||||  || ||||||||||||||| |||| || ||||||||||||| ||||    
T  26520361 cttatgtataaactgtttctataacaaaagatgaaataaagttaaattgttttcgtgtaagctataagctatttt 26520287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 37864053 - 37864011
Alignment:
Q  144 taaaataaagttaaattattttggtttaagctataagctgttt 186  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||    
T  37864053 taaaataaagttaaattgtttttgtttaagatataagctgttt 37864011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 49803151 - 49803201
Alignment:
Q  115 tatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    |||||||||| |||||||||||||||  ||||||| |||||||||| ||||    
T  49803151 tatgtataagttatttctatagcaaaagataaaatgaagttaaattgtttt 49803201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 54392950 - 54392877
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    |||||||||||| ||||||||||  ||| |||||| |||||||||||| |||| || || ||||| |||||||||    
T  54392950 cttatgtataagctatttctataataaaaaataaa-taaagttaaattgtttttgtatatgctattagctgtttt 54392877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 4071948 - 4071985
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||||||||| || |||||||||||||||||||    
T  4071948 ataagctgttttcataagctctctcaaacagtctcaca 4071985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 17822864 - 17822799
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||||||||||||  ||||||  ||| ||||||||| |||||||  ||||| ||||||||||||    
T  17822864 ataagctgttttcatatgttctcctaaatagtctcacagaacttatgtcagtagataagctcaaat 17822799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 22666439 - 22666500
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    |||||||||||||||  ||||||||||||| |||| |||  || ||||||||||||| ||||    
T  22666439 tatttctatagcaaaacataaaataaagttcaattttttacgtataagctataagctttttt 22666500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 39603169 - 39603124
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    ||||||||||||| | ||||||| |||||||||||||| |||||||    
T  39603169 ataagctgttttcctaagttctcccaaacagtctcacaaaacttat 39603124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 39691148 - 39691083
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||  ||| | |||||||||||||||||||| |||||||   |||| ||||||||||||    
T  39691148 ataagctgttcccataaattctctcaaacagtctcacaaaacttatgctagtagataagctcaaat 39691083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 56480286 - 56480363
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| ||||||| |||||| ||| ||||  | |||||||||||||||| |||  || |||| ||||||||||||||||    
T  56480286 cttacgtataagctatttccataacaaaagacaaaataaagttaaattgtttatgtataagttataagctgttttcat 56480363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 3175894 - 3175966
Alignment:
Q  118 gtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||| || ||||||||||||  |||||||||||| ||||| ||||    |||| ||||||||||||||||    
T  3175894 gtataagctacttctatagcaaaagataaaataaagtcaaattgttttcaagtaagttataagctgttttcat 3175966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 4212814 - 4212874
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttcta 133  Q
    ||||| ||||||| ||||||| ||||||| |||| ||| | ||||||||||| ||||||||    
T  4212814 gtttggataaacaacttattttcagcttatagcacaagcgattatgtataagctatttcta 4212874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 22661960 - 22662016
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagct 182  Q
    |||||||||||||||  ||||||||||||| |||| |||  || |||||||||||||    
T  22661960 tatttctatagcaaaacataaaataaagttcaattttttacgtataagctataagct 22662016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 23459579 - 23459643
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||| |||||||||  ||||||| ||||||| || ||||  | |||||||||||||||||||||    
T  23459579 tatttttatagcaaaagataaaatgaagttaagttgttttcttataagctataagctgttttcat 23459643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 29912900 - 29912940
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttg 166  Q
    ||||||||||||||| ||||||||||||| ||||| |||||    
T  29912900 tatttctatagcaaaaaataaaataaagtaaaattgttttg 29912940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 39137581 - 39137649
Alignment:
Q  182 tgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    ||||||||| |||||||||  |||||||| || |||||| | ||||||||||||| ||||  |||||||    
T  39137581 tgttttcataagttctctctgacagtctcgcaaaacttacttcagtatataagctaaaataagtcaatc 39137649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 44138496 - 44138544
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaatt 160  Q
    ||||||||||||| | ||||||||||| |  ||||||||||||||||||    
T  44138496 gcttatgtataagctgtttctatagcagaagataaaataaagttaaatt 44138544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 57)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 36070147 - 36070288
Alignment:
Q  73 gtttgaataaacagctta-tttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggttta 171  Q
    ||||| ||||||||| || ||||||||||| |||| ||| ||||||||||  | ||||| |||| ||||  |||||||||||||||||| | || |  ||    
T  36070147 gtttgtataaacagcctaatttgcagcttatagcataagcgcttatgtatgggctatttttataacaaaagataaaataaagttaaattgtcttcggata 36070246  T
Q  172 agctataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||| ||||||||| |||||||  |||||||||||||    
T  36070247 agctataagttgttttcataagttctcctaaacagtctcaca 36070288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 9656601 - 9656665
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||||| ||||||||||||||||||||||||  | ||||||||||||||| |||||    
T  9656601 tatttctatagcaaaaaataaaataaagttaaattattttcatataagctataagctgtgttcat 9656665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 34619551 - 34619445
Alignment:
Q  73 gtttgaataaacagctta-tttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggttta 171  Q
    ||||| |||||||||||| ||||||||||| |||| ||  |||||||||||||  ||||||||| ||||  ||||||||| |||||||| |||| || ||    
T  34619551 gtttggataaacagcttaatttgcagcttatagcataattgcttatgtataagccatttctataacaaaagataaaataaggttaaattgtttttgtata 34619452  T
Q  172 agctata 178  Q
    |||||||    
T  34619451 agctata 34619445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 2295167 - 2295232
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||  ||||| ||||||||||||    
T  2295167 ataagctgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaat 2295232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 49517012 - 49517085
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||| |||||||||| ||||  |||||||||||| ||||| ||||  |||||||||||||||||||||||    
T  49517012 tgtataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcat 49517085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 33527320 - 33527197
Alignment:
Q  73 gtttgaataaacagcttattt-gcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggttta 171  Q
    ||||| ||||||||||||||| |||||||| |||| ||| ||||||| ||||| |||||||| | ||||  |||||||| ||| ||| | ||||  | ||    
T  33527320 gtttggataaacagcttattttgcagcttagagcataagcgcttatgaataagctatttctaaaacaaaagataaaatacagtcaaactgttttcatata 33527221  T
Q  172 agctataagctgttttcatcagtt 195  Q
    | ||||||||||||||||| ||||    
T  33527220 atctataagctgttttcataagtt 33527197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 9572237 - 9572163
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| || |||||||||||||||  ||||||||||||||||||  ||| || |||||||||||| ||||||||    
T  9572237 atgtattagctatttctatagcaaaagataaaataaagttaaattgcttttgtataagctataagccgttttcat 9572163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 2294809 - 2294926
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaa 172  Q
    ||||| || |||| ||||||||| |||||  ||| ||| ||||||| ||||| ||||| ||||| |||| || | ||||||||||||| |||| |  |||    
T  2294809 gtttggatgaacaacttatttgctgcttatggcataagcgcttatgaataaggtatttttataggaaatgatcatataaagttaaattgtttttggataa 2294908  T
Q  173 gctataagctgttttcat 190  Q
    |||||||||| |||||||    
T  2294909 gctataagctattttcat 2294926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 29904822 - 29904887
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||||||||| || |||||||||||||||||||||| |||||||   |||| ||||||||||||    
T  29904822 ataagctgtttttataagttctctcaaacagtctcacaaaacttatgcaagtagataagctcaaat 29904887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 37769779 - 37769718
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    ||||| |||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||||    
T  37769779 tatttttatagcaaatgataaaataaagttaaattatttttgtttatgctacaagttgtttt 37769718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 38578469 - 38578538
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttt 186  Q
    |||||||| |||||||||| ||||  |||| |||||||||||||||||| || ||||||||||| |||||    
T  38578469 tgtataagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgttt 38578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 24915170 - 24915106
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||| |  |||||||||||||||||| |||| || || ||||||||||||||||||    
T  24915170 tatttctatagcagaagataaaataaagttaaattgtttttgtatatgctataagctgttttcat 24915106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 39658596 - 39658537
Alignment:
Q  129 ttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttc 188  Q
    ||||||||||||  ||||| ||||||||||||||||| || |||||||||||| ||||||    
T  39658596 ttctatagcaaaagataaagtaaagttaaattattttcgtataagctataagcagttttc 39658537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 6976884 - 6976938
Alignment:
Q  111 ggcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||||||||||||||| ||||  |||| ||||||||||| ||||||    
T  6976884 ggcttatgtataagatatttctataacaaaagataagataaagttaaactatttt 6976938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 29128415 - 29128353
Alignment:
Q  128 tttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||| ||||  ||||||||||||||| ||||||| |||||||||||||  |||||||||    
T  29128415 tttctataacaaaagataaaataaagttaatttattttcgtttaagctataaattgttttcat 29128353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 37841939 - 37842001
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctata 178  Q
    ||||||||| |||| ||||| ||||| |||||||||||||||||| |||| || |||||||||    
T  37841939 atgtataagctattcctataacaaatgataaaataaagttaaattgttttcgtataagctata 37842001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 38116318 - 38116192
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctca 211  Q
    ||||||||||||| |||||| |||||||| | |||||||  |||||||| | || || ||||||| ||| |||||| ||  ||||||||||| |||||||    
T  38116318 gcttatgtataagctatttcaatagcaaaga-taaaata--gttaaattgtgttcgtataagctagaagttgttttgataggttctctcaaatagtctca 38116222  T
Q  212 cacaacttattgcagtatataagctcaaat 241  Q
    || ||| |||   |||| ||||||||||||    
T  38116221 caaaacctatgctagtagataagctcaaat 38116192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 46423334 - 46423397
Alignment:
Q  130 tctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    ||||||||||| |||||||||  |||||||| ||||||  ||||||||||||||||||||| ||||    
T  46423334 tctatagcaaaaaataaaata--gttaaattgttttggcataagctataagctgttttcataagtt 46423397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 1432414 - 1432530
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaa 172  Q
    ||||| |||||||||||||| || ||||| |||| |||  | |||||||||| ||||||||||| |||  |||||||| |||| |||| ||||  | |||    
T  1432414 gtttggataaacagcttatt-gcggcttatagcataagcacatatgtataagctatttctatagtaaaagataaaatagagttcaattgtttttttataa 1432512  T
Q  173 gctataagctgttttcat 190  Q
    |||||||  |||||||||    
T  1432513 gctataaattgttttcat 1432530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 3887765 - 3887716
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaatta 161  Q
    ||||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  3887765 gcttatgtataagctatttcaatagcaaaagataaaataaagttaaatta 3887716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 4256173 - 4256108
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataa 179  Q
    ||||||||||| |||||||| | ||||  ||| ||||||||||||||||||| || ||||||||||    
T  4256173 ttatgtataagctatttctacaacaaaagatacaataaagttaaattattttcgtataagctataa 4256108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 11218038 - 11217977
Alignment:
Q  152 agttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||| |||| || ||||||||||| |||||||| |||||||| ||||| ||||||||    
T  11218038 agttaaattgttttcgtataagctataagttgttttcaccagttctcccaaaccgtctcaca 11217977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 37842527 - 37842410
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaa 172  Q
    |||| |||||||| |||||||| |||||| |||   |  || |||||||||| |||||||||||||||  || ||||||||||||| | | || |  |||    
T  37842527 gtttcaataaacaacttatttgaagcttatagcttgaatgcctatgtataagctatttctatagcaaaagatgaaataaagttaaactgtgttcgaataa 37842428  T
Q  173 gctataagctgttttcat 190  Q
    |||||||| |||||||||    
T  37842427 gctataagttgttttcat 37842410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 38001666 - 38001711
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||    
T  38001666 ataagctgttttcataagttctcccaaacagtctcacaaaacttat 38001711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 49557083 - 49557156
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||| |||||||||| ||||  |||||||||||||||||  | ||  ||||||||||||| |||||||||    
T  49557083 tgtataagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttttcat 49557156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 37517165 - 37517101
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaa 240  Q
    ||||||||||||| | |||||| ||| ||||||||||| |||||||   ||||||||||||||||    
T  37517165 ataagctgttttcgtaagttctttcatacagtctcacaaaacttatgcaagtatataagctcaaa 37517101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 3234015 - 3233940
Alignment:
Q  175 tataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    |||||| ||||||||| ||||||| | |||||||||||| ||||||  ||| || ||||||||||||  |||||||    
T  3234015 tataagttgttttcataagttctccctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatc 3233940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 7028229 - 7028292
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagct 175  Q
    ||||||||||||  |||||||||||||||  ||||||||||||||| || |||| || ||||||    
T  7028229 gcttatgtataaactatttctatagcaaaagataaaataaagttaagttgtttttgtataagct 7028292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 30191937 - 30192004
Alignment:
Q  121 taagatatttctatagcaaataataaaataaagttaaattattttg-gtttaagctataagctgtttt 187  Q
    |||| ||||| ||||||||| |||||||||||||||| |||||||| |  || |||||||||||||||    
T  30191937 taagctatttttatagcaaaaaataaaataaagttaatttattttgtgcatatgctataagctgtttt 30192004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 33204490 - 33204443
Alignment:
Q  143 ataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||||| ||||||| || |||||| ||||||||||||||    
T  33204490 ataaaataaagttaatttattttcgtataagctgtaagctgttttcat 33204443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 15565963 - 15565889
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttc 188  Q
    |||||||||  ||||||| | ||||||  |||||||||||| ||| |||||| || ||| |||||||||||||||    
T  15565963 ttatgtatataatatttccaaagcaaaagataaaataaagtcaaactatttttgtataaactataagctgttttc 15565889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 15687206 - 15687136
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagct 182  Q
    ||||| ||| ||| |||||||||| ||||  |||||||||||||||||| |||| || ||||||| |||||    
T  15687206 gcttaagtacaagctatttctataacaaaatataaaataaagttaaattgttttcgtataagctacaagct 15687136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 33204382 - 33204328
Alignment:
Q  187 tcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||| ||||||| |||||||||||||| |||||||  ||||| ||||||||||||    
T  33204382 tcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctcaaat 33204328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 37295815 - 37295773
Alignment:
Q  148 ataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||| |||| |||||||||||||| |||||||||    
T  37295815 ataaagttaaattgttttcgtttaagctataagttgttttcat 37295773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 49938818 - 49938892
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    ||||||||||||||| ||||||| |||||| ||||||| |||||||  ||  |||||| |||||||  |||||||    
T  49938818 ataagctgttttcataagttctcccaaacaatctcacaaaacttatgccacgatataaactcaaataagtcaatc 49938892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 52286615 - 52286693
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||| |||||||||||||| | ||||  ||||||||||||||||  |||||  | |||||||||| || |||||||    
T  52286615 gcttatgaataagatatttctacaacaaaagataaaataaagttaaacaattttcatataagctataaactattttcat 52286693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 488913 - 488962
Alignment:
Q  87 cttatttgcagcttacagcaaaagggcttatgtataagatatttctatag 136  Q
    |||||||| |||||| |||| ||| ||||||||||||| |||||||||||    
T  488913 cttatttgaagcttatagcacaagtgcttatgtataagctatttctatag 488962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 6557043 - 6557088
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    ||||||| ||||||| |||||||||||| ||||||||| |||||||    
T  6557043 ataagctattttcataagttctctcaaatagtctcacaaaacttat 6557088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 9572100 - 9572063
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  9572100 ataagctgttttcataagttctcccaaacagtctcaca 9572063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 15361648 - 15361728
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataa--taaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||| |||  |||||||||| |||| ||  |||| |||||| ||||||||||  | |||||||||||||||||||||    
T  15361648 gcttatgtgtaaactatttctataacaaagaagataaagtaaagtcaaattattttcatataagctataagctgttttcat 15361728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 38170819 - 38170758
Alignment:
Q  119 tataagatatttctatagcaaataataaaataaa-gttaaattattttggtttaagctataa 179  Q
    ||||||||||||||| | ||||  |||||||||| ||||||||||||| || ||||||||||    
T  38170819 tataagatatttctacaacaaaagataaaataaaagttaaattattttcgtataagctataa 38170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 38247398 - 38247463
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||| ||||||| ||||||||  |||| |||||||  ||||| ||||| ||||||    
T  38247398 ataagctgttttcataagttctcccaaacagtgacacaaaacttatgccagtagataagttcaaat 38247463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 39976201 - 39976144
Alignment:
Q  184 ttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||| |||||||||||||||| ||||| |||||||  ||||| |||| |||||||    
T  39976201 ttttcataagttctctcaaacagtttcacaaaacttatgtcagtagataatctcaaat 39976144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 43371891 - 43371854
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||||||||| || |||||||||||||||||||    
T  43371891 ataagctgttttcataagctctctcaaacagtctcaca 43371854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 49692052 - 49692015
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  49692052 ataagctattttcataagttctctcaaacagtctcaca 49692015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 49888705 - 49888782
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||| ||||||| | | |||  ||||||||||||| |||| |||| || |||||||| || |||||||||    
T  49888705 cttatgtataagctatttctttggaaaaagataaaataaagtttaattgttttcgtataagctattagttgttttcat 49888782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 50644253 - 50644180
Alignment:
Q  177 taagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    |||| ||||||||| ||||||| |||||||||||||| ||| |||   |||| ||||||||||||  |||||||    
T  50644253 taagttgttttcataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataagtcaatc 50644180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 473038 - 473082
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttat 117  Q
    ||||| ||||||| ||||||||||||||||| |||||| ||||||    
T  473038 gtttggataaacaacttatttgcagcttacaacaaaagcgcttat 473082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 4445646 - 4445698
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    |||||||||| | |||||||||| |||| |||| |||||||||||||| ||||    
T  4445646 cttatgtataggctatttctataacaaaaaatacaataaagttaaattttttt 4445698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 4549803 - 4549851
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaatt 160  Q
    ||||||||| ||| |||||||||| ||||  ||||||||||||||||||    
T  4549803 gcttatgtacaagctatttctataacaaaagataaaataaagttaaatt 4549851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 4768966 - 4768914
Alignment:
Q  103 agcaaaagggcttatgtataagatatttctatagcaaataataaaataaagtt 155  Q
    |||||||| ||||||||||||| |||| ||||| ||||  |||||||||||||    
T  4768966 agcaaaagtgcttatgtataagctattgctataccaaaagataaaataaagtt 4768914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 10809315 - 10809363
Alignment:
Q  145 aaaataaagttaaattattttggtttaagctataagctgttttcatcag 193  Q
    |||||||||||||| |||||| || ||||||||||| |||| |||||||    
T  10809315 aaaataaagttaaagtatttttgtgtaagctataagttgttctcatcag 10809363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 37617462 - 37617390
Alignment:
Q  178 aagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    ||||||||||||| | ||||| |||||||||||||| ||||||  ||| || |||| |||||||  |||||||    
T  37617462 aagctgttttcataaattctcgcaaacagtctcacaaaacttacggcaatagataaactcaaataagtcaatc 37617390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 43722470 - 43722378
Alignment:
Q  90 atttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagct 182  Q
    ||||| |||||| |||| ||| ||||||||||||| ||||| |||| || |  ||||||||||||| ||||  ||  || |||||||||||||    
T  43722470 atttgtagcttatagcacaagcgcttatgtataagctatttatataacagaagataaaataaagttcaattggttccgtataagctataagct 43722378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 48064261 - 48064329
Alignment:
Q  127 atttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    ||||||||||||||  |||||||||||| ||| |||||| || |||| |||||| || |||||| ||||    
T  48064261 atttctatagcaaaagataaaataaagtaaaactatttttgtataagttataagttgatttcataagtt 48064329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 48830207 - 48830131
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||| |||||||||  | ||  |||||||||||| ||| ||||||  | |||||||||| ||||||||||    
T  48830207 ttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcat 48830131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 50725027 - 50725075
Alignment:
Q  74 tttgaataaacagcttatttgcagcttacagcaaaagggcttatgtata 122  Q
    ||||||||||||||||| |||||| ||||| || ||| |||||||||||    
T  50725027 tttgaataaacagcttaattgcagtttacaacacaagcgcttatgtata 50725075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 39907710 - 39907818
Alignment:
Q  82 aacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagc 181  Q
    |||| ||||||||||||||| |||| |||  |||||||||||||||||||   |||||| | |||||||| |||||||| |||| || |||||||||| |    
T  39907710 aacaacttatttgcagcttatagcataagcacttatgtataagatatttcctcagcaaaaagtaaaataaggttaaattgtttttgtataagctataaac 39907809  T
Q  182 tgttttcat 190  Q
    |||||||||    
T  39907810 tgttttcat 39907818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 34083644 - 34083573
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagttct 197  Q
    |||||||||||||||  |||||||||||||||||| |||  || ||||||||||||||||||||| ||||||    
T  34083644 tatttctatagcaaaagataaaataaagttaaattgtttgtgtataagctataagctgttttcataagttct 34083573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 12110263 - 12110375
Alignment:
Q  79 ataaacagctta-tttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctat 177  Q
    |||||||||||| |||||| |||| |||| |||  |||||| ||||  |||||||||  || |  |||||||||||| ||||| ||||||| ||||||||    
T  12110263 ataaacagcttaatttgcaacttatagcataagcacttatgaataacctatttctattacacaagataaaataaagtcaaattgttttggtataagctat 12110362  T
Q  178 aagctgttttcat 190  Q
    |||||||||||||    
T  12110363 aagctgttttcat 12110375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 40689105 - 40689041
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||||||  |||||||||||||||||||||||  | ||||||||||||||| |||||    
T  40689105 tatttctatagcaaaagataaaataaagttaaattattttcatataagctataagctgtgttcat 40689041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 49060479 - 49060555
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||| |||||||||| |||| ||||||||||||| ||||||||||  | ||||||||||| | |||||||    
T  49060479 ttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcat 49060555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 8960764 - 8960707
Alignment:
Q  108 aagggcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||||| | |||| ||||||||||| |||||||||||||||||| ||||    
T  8960764 aagggcttatgtatatgctattcctatagcaaatgataaaataaagttaaattgtttt 8960707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 20526928 - 20526891
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20526928 ataagctgttttcatcagttctctcaaacagtctcaca 20526891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 30180002 - 30180063
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    |||||| ||||||||  |||||||||||||||||| |||| || ||||||||||||||||||    
T  30180002 tatttcgatagcaaaagataaaataaagttaaattgttttcgtataagctataagctgtttt 30180063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 27863722 - 27863659
Alignment:
Q  178 aagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||  ||||  ||||||||||||    
T  27863722 aagctgttttcataagttctctcaaatagtctcacaaaacttatgccagtggataagctcaaat 27863659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 36874097 - 36874022
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttc 188  Q
    |||||||||||| ||||||||||  |||| |||||||||| || |||||||||  | ||||||||||| |||||||    
T  36874097 cttatgtataagctatttctataagaaatgataaaataaatttgaattattttcttataagctataagttgttttc 36874022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 1432099 - 1432019
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaa---gttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||| |||||||||| ||||  ||||||||||   |||||||||||||  | |||||||| ||||||||||||    
T  1432099 cttatgtataagttatttctataacaaaagataaaataaaaaagttaaattattttcatataagctatcagctgttttcat 1432019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 5628703 - 5628621
Alignment:
Q  108 aagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||| ||||| ||||| |||| ||||| |||||||| |||| || | ||||  |||||| ||||||||||||||||    
T  5628703 aagggcttatgcataagctatttttataacaaatgataaaatagagttgaactgttttcatttaagatataagctgttttcat 5628621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 22296397 - 22296283
Alignment:
Q  79 ataaacagcttatttgcagcttacagca----aaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagc 174  Q
    ||||||| ||||||||||||||| ||||     ||||||||||||||  | |||||||||||| ||  |||||||||||||||||||||||  | ||| |    
T  22296397 ataaacaacttatttgcagcttatagcacaagcaagggcttatgtatttgttatttctatagcgaa-gataaaataaagttaaattattttcctataacc 22296299  T
Q  175 tataagctgttttcat 190  Q
    |||||  |||||||||    
T  22296298 tataaattgttttcat 22296283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 27548200 - 27548278
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| |||||| ||||||  |||||||  ||||||||||||  |||| ||||  |||||||||||||||||||||||    
T  27548200 gcttatctataagctatttccttagcaaaagataaaataaagtctaattgttttcatttaagctataagctgttttcat 27548278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 33673015 - 33673088
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttt 186  Q
    ||||||||||||| || ||||||||||||  ||||||| || ||||||||| || || |||||||||||||||||    
T  33673015 gcttatgtataagctacttctatagcaaaggataaaat-aacttaaattatatttgtataagctataagctgttt 33673088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 37832272 - 37832195
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| |||||||  |||||||||||||||  |||||||||||||| ||| |||| | |||||||||||||| |||||||    
T  37832272 gcttgtgtataaactatttctatagcaaaatataaaataaagttagattgttttcg-ttaagctataagcttttttcat 37832195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 39907888 - 39907937
Alignment:
Q  192 agttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||||||||||||||||||| |||||||  | ||||||||||||||||    
T  39907888 agttctctcaaacagtctcacaaaacttatccctgtatataagctcaaat 39907937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 22283862 - 22283799
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||||| | ||||||||||||||||| |||| || | |||||||| ||||||||||    
T  22283862 tatttctatagcaaaga-taaaataaagttaaattgtttttgtatcagctataaactgttttcat 22283799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 27121718 - 27121666
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    |||||||||||||||||||||||  |||| |||||||||||| ||||| ||||    
T  27121718 cttatgtataagatatttctataataaatgataaaataaagtcaaattgtttt 27121666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 47177578 - 47177650
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    |||||||| |||||||||| ||||  | |||| ||||||||||| ||||  | ||||||||||||||||||||    
T  47177578 tgtataaggtatttctatatcaaaatacaaaacaaagttaaattgttttcatataagctataagctgttttca 47177650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 7453537 - 7453454
Alignment:
Q  106 aaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaa-ttattttggtttaagctataagctgttttc 188  Q
    ||||||| | ||||||||||| |||||||||||||  |||||||||||| ||| || ||||  | ||||||||||| |||||||    
T  7453537 aaaagggttcatgtataagatttttctatagcaaaagataaaataaagtcaaatttgttttcatataagctataagatgttttc 7453454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 13960883 - 13960953
Alignment:
Q  142 aataaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||||||||||||| |||| || ||| ||||||| ||||||  | ||||||||||||| ||||||||    
T  13960883 aataaaataaagttaaattgtttttgtataacctataagttgtttt-ttaagttctctcaaacggtctcaca 13960953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 20526403 - 20526461
Alignment:
Q  132 tatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||  |||||||||||||||||||| || ||  | ||||||||||||||||||    
T  20526403 tatagcaaaagataaaataaagttaaattatgtttgtacatgctataagctgttttcat 20526461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 21568495 - 21568457
Alignment:
Q  175 tataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  21568495 tataagctgttttcataagttctcccaaacagtctcaca 21568457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 6824858 - 6824931
Alignment:
Q  115 tatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttc 188  Q
    |||||||||| |||||||||| ||||  ||| || ||||||||||| |||| ||  ||| ||||||||||||||    
T  6824858 tatgtataagctatttctataacaaaagatagaacaaagttaaattgttttagtacaagttataagctgttttc 6824931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 19302562 - 19302497
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||| | ||||| |||| | ||||||| |||||||  ||||| ||||||||||||    
T  19302562 ataagctgttttcataaattctcccaaatattctcacaaaacttatgtcagtagataagctcaaat 19302497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 20526517 - 20526554
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  20526517 ataaactgttttcataagttctctcaaacagtctcaca 20526554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 33128629 - 33128662
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagca 106  Q
    ||||| ||||||||||||||||||||||||||||    
T  33128629 gtttggataaacagcttatttgcagcttacagca 33128662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 33601409 - 33601344
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||| |||||||  ||| ||||||||| |||||||  || || ||||||||||||    
T  33601409 ataagctgttttcataagttctcgaaaagagtctcacaaaacttatgccaatagataagctcaaat 33601344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 3610873 - 3610797
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttc 188  Q
    ||||||||||||| |||||||| | ||||  ||||||| |||  ||| | ||||||| ||||||||||| |||||||    
T  3610873 gcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagctataagttgttttc 3610797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 3968324 - 3968280
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaatt 160  Q
    ||||||||| |||||||||||||||  |||||||||| |||||||    
T  3968324 atgtataagttatttctatagcaaaagataaaataaatttaaatt 3968280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 25599927 - 25599879
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    |||||||| ||||| ||||||| || ||||||||| |||||||||||||    
T  25599927 tgtataagttatttttatagcacatgataaaataacgttaaattatttt 25599879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 30496643 - 30496719
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||  |||||||||| ||||  |||||||||||| ||||| |||| || ||| ||||| | |||||||||    
T  30496643 ttatgtataaactatttctataacaaaatataaaataaagtcaaattgttttcgtataacctataggttgttttcat 30496719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 42656453 - 42656517
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctat 177  Q
    ||||| |||||| |||||||||| ||||  |||||||||||| |||| ||||| || ||||||||    
T  42656453 cttatatataagctatttctataacaaaagataaaataaagtcaaatcatttttgtataagctat 42656517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 43153030 - 43152982
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    |||||||| |||||||||| ||||  |||||||||||||||||| ||||    
T  43153030 tgtataagctatttctataacaaaagataaaataaagttaaattgtttt 43152982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 6654548 - 6654627
Alignment:
Q  108 aagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |||| ||||| |||| |||||| || |||||||||||    
T  6654548 aagggcttatgtataagttatttctataacaaataataaaattaagtcaaattgtttttgtttaaactttaagctgtttt 6654627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 9093689 - 9093611
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||| ||||| |||||||||| ||||  |||||||||||||||||| |||| || |||||||||||||||||||||    
T  9093689 gcttatggataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgttttcat 9093611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 4006637 - 4006729
Alignment:
Q  98 cttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| |||| ||| ||||||| |||||||||||||||| ||||| |||||||||||| ||||| ||||  | ||||||||||| |||||||||    
T  4006637 cttatagcataagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcat 4006729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 29274362 - 29274284
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||| |||||||||||||||  |||||||||||| ||||| ||||  | |||||||||| ||||||||||    
T  29274362 gcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcat 29274284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 2735013 - 2735084
Alignment:
Q  119 tataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| ||| |||||| ||||  ||||||||||||||||||||||| || ||| |||||||||||||||||    
T  2735013 tataagctatgtctataacaaaagataaaataaagttaaattatttttgtataatctataagctgttttcat 2735084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 10452493 - 10452392
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctca 211  Q
    ||||||||||||| |||||||||| ||||  |||||||||| | ||| ||||||  | ||||||||||| ||||| ||| |  ||||||||||||| |||    
T  10452493 gcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccataaactctctcaaacagtatca 10452394  T
Q  212 ca 213  Q
    ||    
T  10452393 ca 10452392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 24476540 - 24476614
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    |||||||||||| |||||||||||||||  |||||||  ||||||||||||||  | ||||| |||||| |||||    
T  24476540 cttatgtataagctatttctatagcaaaagataaaatgtagttaaattattttcatataagcgataagcagtttt 24476614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 7485167 - 7485102
Alignment:
Q  146 aaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctca 211  Q
    ||||||||||||||| ||||  | ||||||||||| ||||||||| || |||||||||||| ||||    
T  7485167 aaataaagttaaatttttttcatataagctataagttgttttcataagctctctcaaacagcctca 7485102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 9559674 - 9559621
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||| |||||||||||||||  |||||||||| ||||||| ||||    
T  9559674 gcttatgtataagttatttctatagcaaaagataaaataaatttaaattgtttt 9559621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 9604821 - 9604869
Alignment:
Q  147 aataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    |||||||| |||||||||| || ||||||||||||||||||||| ||||    
T  9604821 aataaagtaaaattatttttgtataagctataagctgttttcataagtt 9604869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 658576 - 658518
Alignment:
Q  121 taagatatttctatagcaaataat--aaaataaagttaaattattttggtttaagctat 177  Q
    |||| ||||||||||||||| ||   ||||||||||||||||||||| |||||||||||    
T  658576 taagttatttctatagcaaaaaaataaaaataaagttaaattatttttgtttaagctat 658518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 11340758 - 11340680
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| ||||||||| ||||||| ||||  ||||||||||||||| |||||||  | || |||||||| || ||||||    
T  11340758 gcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 11340680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 24836330 - 24836264
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataag 180  Q
    ||||||||||| |||||||||| ||||  |||||||||||| ||||| |||| || ||| |||||||    
T  24836330 ttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttcgtataaactataag 24836264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 264308 - 264373
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctat 177  Q
    |||||| |||||| |||||||| ||||||  |||||||||||||||||  |||| || ||||||||    
T  264308 gcttatatataagctatttctaaagcaaaagataaaataaagttaaatcgttttcgtctaagctat 264373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 507157 - 507222
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctat 177  Q
    ||||||||||||  |||||||||| ||||  |||||||||||||| ||| |||| || ||||||||    
T  507157 gcttatgtataaattatttctataacaaaagataaaataaagttagattgtttttgtataagctat 507222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 1402942 - 1403011
Alignment:
Q  121 taagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| |||||||||| ||||  |||||||||||||||| ||||||  | ||||||||||  |||||||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcat 1403011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 3785811 - 3785758
Alignment:
Q  134 tagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    |||||||  |||||||||||||||| | |||| || ||||||||||||||||||    
T  3785811 tagcaaaagataaaataaagttaaactgttttcgtataagctataagctgtttt 3785758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 29296395 - 29296350
Alignment:
Q  143 ataaaataaagttaaattattttggtttaagctataagctgttttc 188  Q
    ||||||||||||||||||||||| || |||| |||||| |||||||    
T  29296395 ataaaataaagttaaattatttttgtataaggtataagttgttttc 29296350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 32206152 - 32206083
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagct 182  Q
    ||||||| |||| ||| |||||  ||||  || |||||||||||||||||||| || |||||||||||||    
T  32206152 cttatgtgtaagctatctctatgacaaaagatgaaataaagttaaattattttagtataagctataagct 32206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 430508 - 430456
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    |||||||||||| ||||||||||  |||  || ||||||||||||||||||||    
T  430508 cttatgtataagctatttctatataaaaagatgaaataaagttaaattatttt 430456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 769090 - 769154
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||| ||||   |||||||||||||| || |||| || |||||||||| ||||||||||    
T  769090 tatttctataacaaaagctaaaataaagttaatttttttttgtataagctataaactgttttcat 769154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 10645455 - 10645411
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaatt 160  Q
    ||||||||| |||||||||||||||  ||||||| ||||||||||    
T  10645455 atgtataagctatttctatagcaaacgataaaatgaagttaaatt 10645411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 20671996 - 20671920
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||| |||||||| | ||||  |||||||||||| ||||| |||| || |||||| |||  |||||||||    
T  20671996 ttatgtataagctatttctagatcaaaagataaaataaagtcaaattgttttcgtataagctttaaattgttttcat 20671920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 42747949 - 42747834
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaa 172  Q
    ||||| |||||||||||||||||| |||| |||| ||  || |||||||||| ||||||||||| | |  |||||  |||||||||||||||  || |||    
T  42747949 gtttggataaacagcttatttgcaacttatagcacaaacgcctatgtataagctatttctatagaataagataaatgaaagttaaattatttatgtgtaa 42747850  T
Q  173 gctataagctgttttc 188  Q
    ||||||||||||||||    
T  42747849 gctataagctgttttc 42747834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 1395593 - 1395686
Alignment:
Q  97 gcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||| |||||||| || |||||||||| |||||||||| ||||  |||||||||||| ||||||||||  | |||||||| | ||||||||||    
T  1395593 gcttatagcaaaagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcat 1395686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 30956751 - 30956682
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    ||||| |||||||||||||||  |||||||||||||||||| |||| || || |||||||| ||||||||    
T  30956751 ataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30956682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 30972563 - 30972494
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    ||||| |||||||||||||||  |||||||||||||||||| |||| || || |||||||| ||||||||    
T  30972563 ataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 44061151 - 44061078
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||| |||||||||||||||  ||||||||| |||||||| ||||  | ||||||||||| |||||||||    
T  44061151 tgtataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagttgttttcat 44061078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 2128403 - 2128331
Alignment:
Q  93 tgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||| |||| ||| | ||||||||||| |||||||||| ||||  |||||||||||||||||| ||||    
T  2128403 tgcagcttatagcataagcgtttatgtataagctatttctataacaaaagataaaataaagttaaattgtttt 2128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 39980800 - 39980864
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaa 240  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||||   |||| |||||||||||    
T  39980800 ataagctgttttcataagttctcttaaacagtctcacaaaacttatgctagtagataagctcaaa 39980864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 31365187 - 31365122
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||||| |||||| ||||||| |||||||||||||| |||||||  || || ||||||||||||    
T  31365187 ataagctgctttcataagttctcccaaacagtctcacaaaacttatgccaatagataagctcaaat 31365122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 48397587 - 48397684
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||| ||||| ||||  |||  |||||||||||| ||||| ||||  ||||||||||||| ||||||||| || |||  |||||| |||||||    
T  48397587 atgtataagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcattagctcttccaaacaatctcaca 48397684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 583991 - 584051
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataag 180  Q
    ||||| ||||||||||| |||| |||||||||||||||||| |||| ||| | ||||||||    
T  583991 ataagttatttctatagaaaatgataaaataaagttaaattgtttttgttcatgctataag 584051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 2719420 - 2719483
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||| ||||||  |||||||||||| ||||| |||| ||||||||||||| ||||||||||    
T  2719420 tatttctaaagcaaaatataaaataaagtgaaattgtttt-gtttaagctataaactgttttcat 2719483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 18405825 - 18405765
Alignment:
Q  181 ctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||||||| ||||||  |||||||||||||| |||||||  ||||| ||||||||||||    
T  18405825 ctgttttcataagttcttgcaaacagtctcacaaaacttatgtcagtagataagctcaaat 18405765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 25447363 - 25447299
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||| |||  |||||||||| ||||||| |||| || |||||||||| ||||||||||    
T  25447363 tatttctatagtaaaagataaaataaacttaaattgtttttgtataagctataaactgttttcat 25447299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 30956824 - 30956780
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttat 117  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||    
T  30956824 gtttggataaacagcttatttgcagcttatagcacaagggcttat 30956780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 30972636 - 30972592
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttat 117  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||    
T  30972636 gtttggataaacagcttatttgcagcttatagcacaagggcttat 30972592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 33405286 - 33405222
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||||||   |||||||||||||| || ||||  | |||||||||||||||||||||    
T  33405286 tatttctatagcaaaaggtaaaataaagttaatttgttttcatataagctataagctgttttcat 33405222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 402678 - 402600
Alignment:
Q  108 aagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    ||||||||||||||||| ||||||||||| |||  || || |||| ||||||| |||| || |||| |||||||||||||    
T  402678 aagggcttatgtataagctatttctatagaaaaagat-aattaaatttaaattgttttcgtataagttataagctgtttt 402600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 46886823 - 46886747
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| |||| || ||||||||| ||||  ||||||||  ||||||||||||| || | |||||||||||||||||||    
T  46886823 gcttatctatatgaaatttctatatcaaaagataaaata--gttaaattatttttgtatgagctataagctgttttcat 46886747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 52618946 - 52619017
Alignment:
Q  118 gtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    ||||||| |||||||| | ||||| || ||||||||||||||| ||||  | |||| |||||||||||||||    
T  52618946 gtataagctatttctaaaacaaatgattaaataaagttaaattgttttcatataagttataagctgttttca 52619017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 35959581 - 35959515
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttt 186  Q
    ||||| ||||||||||| |||  ||||||||||||||||||||||| || || ||| |||| |||||    
T  35959581 ataagctatttctatagaaaaggataaaataaagttaaattatttttgtatatgctgtaagttgttt 35959515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 51510321 - 51510243
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    |||||||| ||||||||| |||||  | ||| |||||| ||||||||||| | ||| ||||||| ||||||||| ||||    
T  51510321 tgtataaggtatttctatggcaaaagaaaaagtaaagtaaaattattttgatataaactataagttgttttcataagtt 51510243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 584118 - 584191
Alignment:
Q  177 taagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    |||||||||||||| | |||||  ||||||||||||| |||||||   |||| ||||||||||||  |||||||    
T  584118 taagctgttttcataaattctccaaaacagtctcacagaacttatgctagtagataagctcaaataagtcaatc 584191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 3776390 - 3776353
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  3776390 ataagctgttttcataagttctctcaaacattctcaca 3776353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 21367738 - 21367783
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    ||||||||||||||| ||||||| ||||||||| |||| |||||||    
T  21367738 ataagctgttttcataagttctcccaaacagtcccacaaaacttat 21367783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 23952230 - 23952161
Alignment:
Q  121 taagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| |||||||||| ||||  ||||||| |||| ||| |||||| || |||||| ||||||||||||||    
T  23952230 taagttatttctataacaaaagataaaattaagtcaaagtatttttgtataagctgtaagctgttttcat 23952161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 24085337 - 24085272
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||| |||||||  || |||||||||| |||||||  | ||| ||||||||||||    
T  24085337 ataagctgttttcataagttctccaaaccagtctcacaaaacttatgccggtagataagctcaaat 24085272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 26878271 - 26878332
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctc 237  Q
    ||||||| ||||||  |||||||||||||||| |||| ||||||||  ||||| ||||||||    
T  26878271 ataagctattttcacaagttctctcaaacagtttcacgcaacttatgtcagtagataagctc 26878332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 37689300 - 37689365
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||| | ||||||| || ||||| ||||| ||| |||| ||||| ||||||||||||    
T  37689300 ataagctgttttcttaagttctcccatacagtatcacagaacctatttcagtaaataagctcaaat 37689365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 43079679 - 43079756
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    |||||||| |||| |||||||||| |||| |||||||  |||||||||  ||||  | |||| |||||||||||||||    
T  43079679 gcttatgtgtaagctatttctataacaaaaaataaaaggaagttaaatcgttttcatataagttataagctgttttca 43079756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 44014218 - 44014295
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||| |||||||||| | ||  |||||| |||||| |||| |||| || |||| ||||||||| ||||||    
T  44014218 cttatgtataagctatttctataactaaagataaaacaaagtttaatttttttcgtgtaagatataagctgctttcat 44014295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 44014798 - 44014761
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  44014798 ataagctgttttcataagttttctcaaacagtctcaca 44014761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 21367611 - 21367682
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||||| ||||||||||     |||||||||||||||| |||| || |||  |||||| |||||||||    
T  21367611 ttatgtataagatatctctatagcaa-----aaaataaagttaaattgttttcgtataatgtataagttgttttcat 21367682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 32555083 - 32555031
Alignment:
Q  143 ataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    |||||||||||| ||||||||||  | ||||||||||| ||||||||| ||||    
T  32555083 ataaaataaagtcaaattattttcctataagctataagttgttttcatgagtt 32555031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 34759659 - 34759619
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaag 153  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  34759659 cttatgtataagctatttctatatcaaaaaataaaataaag 34759619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 37788800 - 37788875
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||| ||||| |||| ||||  ||||||||||||  ||||||||| || ||| ||||||| |||||||||    
T  37788800 ttatgtataagttattt-tataacaaaagataaaataaagtccaattattttcgtataatctataagttgttttcat 37788875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 48365010 - 48364934
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||| |||||| ||| ||||  |||||||||||| ||||| ||||  |||| || ||||| |||||||||    
T  48365010 ttatgtataagttatttcgataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttcat 48364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 10114427 - 10114504
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||| |||||||||||||||  ||||||| ||||| |||| ||||||| |||||||||||||||||||||    
T  10114427 gcttatgtataagctatttctatagcaaaagataaaat-aagttgaattgttttggtataagctataagctgttttcat 10114504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 1929955 - 1930032
Alignment:
Q  79 ataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagtta 156  Q
    ||||||| |||| |||||||||| |||| ||| ||||||||||||| ||||||||||| |||  ||||||||||||||    
T  1929955 ataaacaacttacttgcagcttatagcacaagcgcttatgtataagttatttctatagaaaaagataaaataaagtta 1930032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 7514476 - 7514593
Alignment:
Q  74 tttgaataaacagcttatttgcagcttacagca-aaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaa 172  Q
    |||||||||| | |||| |||||| ||| |||| ||||  |||||||||||| ||||||||||||||| | |||||||| ||| |||| ||||  | |||    
T  7514476 tttgaataaataacttagttgcagattatagcacaaagcccttatgtataagctatttctatagcaaaaactaaaataatgttcaattgttttcatataa 7514575  T
Q  173 gctataagctgttttcat 190  Q
    |||| |||||||||||||    
T  7514576 gctacaagctgttttcat 7514593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 37153045 - 37152963
Alignment:
Q  90 atttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaa 172  Q
    ||||||| |||| || | ||| |||||||||||| ||||||||||| ||||  |||||||||||||||||| |||| ||||||    
T  37153045 atttgcaacttataggataagcgcttatgtataatatatttctataacaaagtataaaataaagttaaattgtttttgtttaa 37152963  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 16211015 - 16210942
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    ||||||||| ||||||||||| |||| |||||||||||||| ||| ||||  | ||||||||||| ||||||||    
T  16211015 atgtataagctatttctatagtaaatgataaaataaagttacattgttttcatataagctataagttgttttca 16210942  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 35534612 - 35534547
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||   |||| ||||||||||||    
T  35534612 ataagctgttttcacaagttctctcaaacagtctcacaaaacttatgttagtagataagctcaaat 35534547  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 4558737 - 4558809
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttt 186  Q
    ||||||||||| ||||||||||  |||  |||||||||||||||||||||||  | || ||||||||||||||    
T  4558737 ttatgtataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgttt 4558809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 7918903 - 7918828
Alignment:
Q  115 tatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||  |||||||||| | || ||||||||||||||||||| ||||  | ||||||||||| |||||||||    
T  7918903 tatgtataacctatttctatatcgaaaaataaaataaagttaaatttttttcttgtaagctataagttgttttcat 7918828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 36338042 - 36337963
Alignment:
Q  103 agcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagct 182  Q
    |||| ||| ||||| ||||||||||||| |||| ||||| || ||||||||||||| |||||  || |||||||||||||    
T  36338042 agcataagtgcttaagtataagatatttttataacaaattatcaaataaagttaaactatttacgtataagctataagct 36337963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 1470985 - 1470911
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||| ||||||||||  |||  |||||||||||| |||||| |||  | |||||||||||||||||||||    
T  1470985 atgtataagctatttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcat 1470911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 6526285 - 6526215
Alignment:
Q  143 ataaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    |||||||||||| ||||| ||| ||| ||| ||||||| ||||||| | |||||||||||||| |||||||    
T  6526285 ataaaataaagtgaaattgtttaggtataatctataagttgttttcctaagttctctcaaacaatctcaca 6526215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 10758375 - 10758321
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataag 180  Q
    |||||||||||||||| |||||||||||||||||| |||| || || ||||||||    
T  10758375 tatttctatagcaaatcataaaataaagttaaattgtttttgtatatgctataag 10758321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 26771336 - 26771398
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctca 238  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||  | ||| |||||||||    
T  26771336 ataagctgttttcataagttctcccaaacagtctcacaaaacttatgcccgtagataagctca 26771398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 28763438 - 28763484
Alignment:
Q  175 tataagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    |||||||||||||||| ||||||| |||||||||||||| |||||||    
T  28763438 tataagctgttttcataagttctcccaaacagtctcacaaaacttat 28763484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 28769472 - 28769394
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||| |||| ||||| ||||  ||||||| |||| ||| ||||||  | |||||||||||||||||||||    
T  28769472 gcttatgtataagctattcctataacaaactataaaattaagtcaaactattttcttataagctataagctgttttcat 28769394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 26215433 - 26215486
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||| |||||||||| ||||  |||||||||||||||| ||||||    
T  26215433 gcttatgtataagctatttctataacaaaagataaaataaagttaaactatttt 26215486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 30251453 - 30251388
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||| | ||||||| |||||||||||||  |||||||  ||||| ||||||||||||    
T  30251453 ataagctgttttcgtaagttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaat 30251388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 42597339 - 42597416
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||| |||||||||| ||||  |||||||||||| ||||| ||||  |  |||||||||| |||||||||    
T  42597339 cttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcat 42597416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 26820142 - 26820214
Alignment:
Q  118 gtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||| |||||||||| ||||  |||||||||||| ||| ||||||| | ||| |||||||| ||||||||    
T  26820142 gtataagttatttctataacaaaagataaaataaagtcaaactattttgttataaactataagccgttttcat 26820214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 29819078 - 29819034
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttat 117  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||    
T  29819078 gtttggataaacaacttatttgcagcttatagcaaaagggcttat 29819034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 773297 - 773344
Alignment:
Q  143 ataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||||||||| ||||  ||| |||||||||||||||||||    
T  773297 ataaaataaagttaaattgttttcattttagctataagctgttttcat 773344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 778357 - 778404
Alignment:
Q  143 ataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||||||||| ||||  ||| |||||||||||||||||||    
T  778357 ataaaataaagttaaattgttttcattttagctataagctgttttcat 778404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 787791 - 787838
Alignment:
Q  143 ataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||||||||| ||||  ||| |||||||||||||||||||    
T  787791 ataaaataaagttaaattgttttcattttagctataagctgttttcat 787838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 1058272 - 1058229
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggctta 116  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||    
T  1058272 gtttgaataaacagcttatttgcagcttatagcacaagcgctta 1058229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 3936787 - 3936862
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttc 188  Q
    |||||||||||  |||||||||| ||||  ||||||||||| |||||| | ||  | |||||||||||||||||||    
T  3936787 cttatgtataatctatttctataacaaaggataaaataaagctaaattgtcttcctataagctataagctgttttc 3936862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 2698726 - 2698772
Alignment:
Q  108 aagggcttatgtataagatatttctatagcaaataataaaataaagt 154  Q
    ||||||||||| ||||| ||||||||||||||| | |||||||||||    
T  2698726 aagggcttatgcataagctatttctatagcaaaaagtaaaataaagt 2698772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 35749572 - 35749506
Alignment:
Q  173 gctataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaa 239  Q
    |||| ||||||||||||| ||||||||||||||| ||| || |||||||  || || ||||||||||    
T  35749572 gctacaagctgttttcataagttctctcaaacagcctcgcaaaacttatgtcaatagataagctcaa 35749506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 1058076 - 1058011
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||| |||||||  ||||||| |||||||||||||| |||||||   |||| ||||||||||||    
T  1058076 ataagcagttttcaaaagttctcccaaacagtctcacaaaacttatgtaagtagataagctcaaat 1058011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 1058199 - 1058130
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    ||||| ||||| |||||||||| |||||||||||||||  | |||| || || |||||||||| ||||||    
T  1058199 ataagctatttttatagcaaatcataaaataaagttaatctgtttttgtatatgctataagctattttca 1058130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 1112790 - 1112867
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    ||||||||||| | |||||||||| ||||  ||||||||| |||||||| ||||    |||||||||||| |||||||    
T  1112790 gcttatgtatatgctatttctataacaaaagataaaataaggttaaattgttttcacataagctataagcggttttca 1112867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 3537159 - 3537098
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctata 178  Q
    ||||||||  ||||||||||||||  |||||||||||| ||||| |||| || |||||||||    
T  3537159 tgtataagcaatttctatagcaaaagataaaataaagtcaaattgttttcgtataagctata 3537098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 10758256 - 10758211
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    ||||||||||||||| | |||| ||||||||||||||| |||||||    
T  10758256 ataagctgttttcataaattctatcaaacagtctcacaaaacttat 10758211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 12497055 - 12497006
Alignment:
Q  192 agttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||||||||||||||||||| |||||||  ||| | ||||||||||||    
T  12497055 agttctctcaaacagtctcacaaaacttatgccaggagataagctcaaat 12497006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 12976158 - 12976199
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaatta 161  Q
    ||||| |||||||||||||||  |||||||||||||||||||    
T  12976158 ataagctatttctatagcaaaatataaaataaagttaaatta 12976199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 16162830 - 16162867
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  16162830 ataagctgttttcataagttttctcaaacagtctcaca 16162867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 16163410 - 16163333
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||| |||||||||| | ||  |||||| |||||| |||| |||| || |||| ||||||||| ||||||    
T  16163410 cttatgtataagctatttctataactaaagataaaacaaagtttaatttttttcgtgtaagatataagctgctttcat 16163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 27049306 - 27049382
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| ||||||  |||||||||||||||  || |||||||||| ||||||||| || |||||||||| || |||||||    
T  27049306 cttacgtataatttatttctatagcaaaagat-aaataaagttcaattattttcgtataagctataaacttttttcat 27049382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 7646145 - 7646221
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||| ||||||||||  |||   ||||||||||||||||| |||| || ||| |||||| |||| |||||    
T  7646145 ttatgtataagctatttctataagaaaaggtaaaataaagttaaattgtttttgtataatctataaactgtcttcat 7646221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 10120827 - 10120859
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtc 208  Q
    ||||||||||||||| |||||||||||||||||    
T  10120827 ataagctgttttcataagttctctcaaacagtc 10120859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 29169009 - 29168949
Alignment:
Q  128 tttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttc 188  Q
    |||||||||||||  ||||||| || |||||||||||| || || | ||||||||||||||    
T  29169009 tttctatagcaaaagataaaattaaattaaattatttttgtatatgttataagctgttttc 29168949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 35374492 - 35374428
Alignment:
Q  126 tatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||||| ||  |||||||||||||||||| ||||  | |||||||||| ||| ||||||    
T  35374492 tatttctatagcgaaagataaaataaagttaaattgttttcatataagctataatctgatttcat 35374428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 37353381 - 37353306
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttc 188  Q
    ||||||||| ||  |||||||||| ||||  ||||| |||||||||||| |||| || || ||||||||||||||||    
T  37353381 gcttatgtacaaactatttctataacaaaagataaa-taaagttaaattgtttttgtgtatgctataagctgttttc 37353306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 40981002 - 40981046
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttat 117  Q
    ||||| ||||||||||||||||||||||| |||| ||| ||||||    
T  40981002 gtttggataaacagcttatttgcagcttatagcacaagcgcttat 40981046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 43717928 - 43717868
Alignment:
Q  181 ctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||||||| ||||||| |||| ||||||||| |||||||  || || ||||||||||||    
T  43717928 ctgttttcataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaat 43717868  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 2416250 - 2416325
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    ||||||||||||| ||||||| |||||||  ||||||| |||||||||| ||||| | ||||||||||||||||||    
T  2416250 gcttatgtataagttatttctgtagcaaaagataaaatgaagttaaattgttttgatataagctataagctgtttt 2416325  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 39567845 - 39567934
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagttctctcaaacag 206  Q
    ||||||||||||||||||| ||||  |||||||||||||||||| |||     ||||||||||||||||||||| |||| || |||||||    
T  39567845 tgtataagatatttctataacaaaagataaaataaagttaaattgtttcaagataagctataagctgttttcataagttttcccaaacag 39567934  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 4026713 - 4026832
Alignment:
Q  73 gtttgaataaacagctta-tttgcagctta-cagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggttt 170  Q
    ||||| |||||||| ||| ||||||||||| ||  | ||| |||||| |||||| ||||| |||||||||  ||||||||||||||||||||||| |  |    
T  4026713 gtttggataaacagtttaatttgcagcttatcatgataagtgcttatctataagctatttttatagcaaaagataaaataaagttaaattatttttgcat 4026812  T
Q  171 aagctataagctgttttcat 190  Q
    ||  ||||||||||||||||    
T  4026813 aaattataagctgttttcat 4026832  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 18066032 - 18066143
Alignment:
Q  79 ataaacagcttatttgcagcttacagcaaaagggcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctata 178  Q
    ||||||| ||||| || |||||| |||| ||| ||| ||||| ||| |||||||| || |||  || ||||||||||||||| ||||  | |||||||||    
T  18066032 ataaacatcttatctgtagcttatagcataagcgctcatgtagaagctatttctacagtaaaatatgaaataaagttaaattgttttcatataagctata 18066131  T
Q  179 agctgttttcat 190  Q
    ||||||||||||    
T  18066132 agctgttttcat 18066143  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 43199351 - 43199429
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| |||||||| |||||||| | ||||  |||||||||||||||||||| || || ||||||||||| |||||||||    
T  43199351 gcttctgtataagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcat 43199429  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 42457887 - 42457963
Alignment:
Q  114 ttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||  ||||||||||| |||  |||||||||||||||||| |||| ||||||||| | |||||| |||||    
T  42457887 ttatgtataatctatttctatagtaaaagataaaataaagttaaattgtttttgtttaagctcttagctgtattcat 42457963  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 1646951 - 1647034
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    ||||||||| ||| ||||| |||||||||  ||||||| ||||| |||| ||||  | ||||||||||||||||||||| ||||    
T  1646951 gcttatgtacaagctatttgtatagcaaacgataaaattaagttcaattgtttttttataagctataagctgttttcataagtt 1647034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 9395071 - 9395150
Alignment:
Q  116 atgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    ||||||||||| ||||||||| |||  ||||||||||| |||||| ||||  | ||| ||||||||||||||||| ||||    
T  9395071 atgtataagatttttctatagaaaaagataaaataaagctaaattgttttcatataatctataagctgttttcattagtt 9395150  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 25609733 - 25609808
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgtttt 187  Q
    ||||||||||||| ||||||||||  |||  |||||||||||| || ||||||| || ||||||||||| ||||||    
T  25609733 gcttatgtataagctatttctataagaaaagataaaataaagtcaatttattttcgtataagctataagttgtttt 25609808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 3102630 - 3102708
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||| ||||| |||||||||  |||||||||||| ||| ||||||  | ||| |||| ||||||||||||    
T  3102630 gcttatgtataagctatttttatagcaaaatataaaataaagtcaaactatttttatataatctattagctgttttcat 3102708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 7043855 - 7043804
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||| |||||||||||  || ||||||||||||||||||||||||    
T  7043855 gcttatgtataagttatttctatag--aacaataaaataaagttaaattatttt 7043804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 27317450 - 27317524
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    ||||| ||||||||| |||||||||||||||||||| | |||||||  | ||| ||||||||||||  |||||||    
T  27317450 ataagttgttttcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatc 27317524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 36534838 - 36534904
Alignment:
Q  175 tataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||||||||||||| |||| || |||||||||||||| |||||||   || ||||||||||||||    
T  36534838 tataagctgttttcataagttatcccaaacagtctcacaaaacttatgaaagcatataagctcaaat 36534904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 42907303 - 42907373
Alignment:
Q  119 tataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    |||||| |||||||||| || |  | |||||||||||||||| |||| |||||||||||||| ||||||||    
T  42907303 tataagctatttctataacagaagaaaaaataaagttaaattgttttcgtttaagctataagttgttttca 42907373  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 3611163 - 3611216
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||| |||||||||||||||   ||||||||||||||||| ||||    
T  3611163 gcttatgtataagttatttctatagcaaaaggtaaaataaagttaaattgtttt 3611216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 5133709 - 5133786
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    ||||||||||||| |||||||||| ||||  ||||||||||| |||| | ||||  | |||| |||||||||||||||    
T  5133709 gcttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataagctgttttca 5133786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 7928297 - 7928232
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||  |||||| || ||||||||||||||||||||  || || ||||||||||||    
T  7928297 ataagctgttttcaaaagttctttctaacagtctcacacaacttatgtcaatagataagctcaaat 7928232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 42659210 - 42659145
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    ||||||||||||||  | ||||| |||||||||||||| |||||||  ||||| ||||||||||||    
T  42659210 ataagctgttttcaaaacttctcccaaacagtctcacaaaacttatgccagtaaataagctcaaat 42659145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 39621890 - 39621971
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    ||||||| |||||||||||||||| || | ||||||||||||| |||   |||| || ||| ||||||||||||||||| ||||    
T  39621890 gcttatgaataagatatttctataacacaaaataaaataaagtcaaa--ctttttgtataatctataagctgttttcataagtt 39621971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 3932295 - 3932342
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattattttgg 167  Q
    ||||| |||||||||||||||  ||||||||||||||||| |||||||    
T  3932295 ataagttatttctatagcaaaagataaaataaagttaaataattttgg 3932342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 2142590 - 2142668
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||| |||||||| |||| |||||||||    |||||||||| || |||||||| || ||||||||||| |||||||||    
T  2142590 gcttgtgtataagctattactatagcaataggtaaaataaagctagattatttttgtataagctataagttgttttcat 2142668  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 3673744 - 3673822
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||| || |||||||||| ||||  |||||||||||||||||| ||||  | |||| |||||| | |||||||    
T  3673744 gcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcatataagttataagtttttttcat 3673822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 8017372 - 8017449
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||||||| || |||||||||| ||||  |||||| ||||||||||||||||  | |||||| ||| ||||||||||    
T  8017372 gcttatgtatcagctatttctata-caaaggataaaacaaagttaaattattttcatataagctgtaaactgttttcat 8017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 12464598 - 12464528
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||| ||||||| ||| |||  |||||||||||||||||| |||| || || |||||||||| |||||||    
T  12464598 ataagctatttctgtagaaaaagataaaataaagttaaattgtttttgtatatgctataagctattttcat 12464528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 15377702 - 15377780
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| |||||| || ||||||| ||||  |||||||||||||| ||| ||||  | |||| ||||||||||||||||    
T  15377702 gcttatttataagctacttctataccaaaggataaaataaagttagattgttttcatataagttataagctgttttcat 15377780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 17952834 - 17952756
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| |||||| |||||||||| ||||  |||||||||||| ||| ||||||  | ||||||| ||| |||||||||    
T  17952834 gcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcat 17952756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 20952426 - 20952500
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    |||| |||||||||| |||||||| ||| ||||| ||| ||||| |  ||||||||||||||||||  |||||||    
T  20952426 ataaactgttttcataagttctcttaaatagtctaacaaaacttttgccagtatataagctcaaataagtcaatc 20952500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 30331830 - 30331896
Alignment:
Q  184 ttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaatttgtcaatc 250  Q
    ||||||| ||||||| |||||||||||||| |||||||  ||||| ||||||| ||||  |||||||    
T  30331830 ttttcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatc 30331896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 32837392 - 32837430
Alignment:
Q  175 tataagctgttttcatcagttctctcaaacagtctcaca 213  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  32837392 tataagctgttttcataagttctcccaaacagtctcaca 32837430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 12313275 - 12313242
Alignment:
Q  143 ataaaataaagttaaattattttggtttaagcta 176  Q
    ||||||||||||||||||||||| ||||||||||    
T  12313275 ataaaataaagttaaattatttttgtttaagcta 12313242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 15305602 - 15305647
Alignment:
Q  120 ataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||| ||||| |||||||||| ||||||||| |||||||||||||    
T  15305602 ataagctatttttatagcaaatgataaaataatgttaaattatttt 15305647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 15757657 - 15757592
Alignment:
Q  176 ataagctgttttcatcagttctctcaaacagtctcacacaacttattgcagtatataagctcaaat 241  Q
    |||||| |||||||| | ||||| ||| |||||||||| |||||||  ||||| ||||||||||||    
T  15757657 ataagcagttttcataaattctcccaagcagtctcacaaaacttatgccagtaaataagctcaaat 15757592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 26143769 - 26143724
Alignment:
Q  117 tgtataagatatttctatagcaaataataaaataaagttaaattat 162  Q
    |||||||| |||||||||||||||  ||||||||||||| ||||||    
T  26143769 tgtataagctatttctatagcaaaagataaaataaagttcaattat 26143724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 39341220 - 39341144
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataat--aaaataaagttaaattattttggtttaagctataagctgttt 186  Q
    |||||||||| || |||||||||| ||||  ||  |||||||||||||| | ||||||| |||| ||||||||||||    
T  39341220 gcttatgtatgagttatttctataacaaaatattaaaaataaagttaaactgttttggtataagttataagctgttt 39341144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 1633744 - 1633700
Alignment:
Q  73 gtttgaataaacagcttatttgcagcttacagcaaaagggcttat 117  Q
    ||||| ||||||||||||||||||||||| |||| ||| ||||||    
T  1633744 gtttggataaacagcttatttgcagcttatagcagaagtgcttat 1633700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 10494628 - 10494688
Alignment:
Q  135 agcaaataataaaataaagttaaattattttggtttaagctataagctgttttcatcagtt 195  Q
    ||||||| |||||||||||| ||||| |||| ||||| | |||||| ||||||||| ||||    
T  10494628 agcaaatgataaaataaagtgaaattgtttttgtttatggtataagttgttttcataagtt 10494688  T

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Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 31744370 - 31744414
Alignment:
Q  177 taagctgttttcatcagttctctcaaacagtctcacacaacttat 221  Q
    |||||||||||||  |||||||||||||||||||| | |||||||    
T  31744370 taagctgttttcaaaagttctctcaaacagtctcagaaaacttat 31744414  T

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Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 40682506 - 40682463
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagtta 156  Q
    ||||||||||||| ||||||||||||||| ||||| |||||||||    
T  40682506 gcttatgtataagctatttctatagcaaa-aataacataaagtta 40682463  T

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Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 43199900 - 43199852
Alignment:
Q  138 aaataataaaataaagttaaattattttggtttaagctataagctgttt 186  Q
    |||| |||||||||||||||||| |||| || ||||||||||| |||||    
T  43199900 aaatgataaaataaagttaaattgtttttgtataagctataagttgttt 43199852  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 104267 - 104214
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattatttt 165  Q
    ||||||||||||| |||||||||| |||| |||||||||| |||| ||||||||    
T  104267 gcttatgtataagttatttctataacaaaaaataaaataatgttatattatttt 104214  T

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Target: scaffold0549 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 1857 - 1779
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| ||||||||| ||||||| ||||  ||||||||||||||| |||||||  | || |||||||| || ||||||    
T  1857 gcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 1779  T

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Target: scaffold0549; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 3947 - 3869
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    |||||| ||||||||| ||||||| ||||  ||||||||||||||| |||||||  | || |||||||| || ||||||    
T  3947 gcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 3869  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 21410 - 21348
Alignment:
Q  113 cttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagct 175  Q
    |||||||||||| ||||| ||||| |||  |||||||||||||||||| |||| || ||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagct 21348  T

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Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 27513 - 27591
Alignment:
Q  112 gcttatgtataagatatttctatagcaaataataaaataaagttaaattattttggtttaagctataagctgttttcat 190  Q
    ||||||||||||| |||||||||| || |  |||||||||||| ||||| ||||  | ||| ||||||| |||||||||    
T  27513 gcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcat 27591  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 178426 - 178381
Alignment:
Q  144 taaaataaagttaaattattttggtttaagctataagctgttttca 189  Q
    |||||||||||||||||||| | || |||||||| |||||||||||    
T  178426 taaaataaagttaaattattgtcgtataagctattagctgttttca 178381  T

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