View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0950_low_5 (Length: 530)

Name: NF0950_low_5
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0950_low_5
NF0950_low_5
[»] chr4 (14 HSPs)
chr4 (96-492)||(21377120-21377517)
chr4 (100-435)||(18281117-18281453)
chr4 (110-441)||(11098469-11098799)
chr4 (100-441)||(42872804-42873142)
chr4 (103-441)||(22473649-22473988)
chr4 (323-443)||(9399214-9399335)
chr4 (278-422)||(13518510-13518655)
chr4 (278-422)||(15018190-15018335)
chr4 (278-422)||(15019830-15019975)
chr4 (325-422)||(39488747-39488845)
chr4 (323-422)||(13518019-13518119)
chr4 (339-422)||(46690497-46690581)
chr4 (306-394)||(24663997-24664088)
chr4 (346-393)||(19457617-19457665)
[»] scaffold0180 (1 HSPs)
scaffold0180 (100-441)||(11170-11511)
[»] scaffold0139 (1 HSPs)
scaffold0139 (100-441)||(4195-4537)
[»] scaffold0094 (1 HSPs)
scaffold0094 (100-435)||(13277-13606)
[»] chr8 (8 HSPs)
chr8 (100-441)||(17857133-17857471)
chr8 (109-441)||(23016475-23016808)
chr8 (301-444)||(23016334-23016477)
chr8 (323-422)||(8366096-8366196)
chr8 (323-422)||(17278270-17278369)
chr8 (278-422)||(17277398-17277543)
chr8 (372-422)||(17277666-17277716)
chr8 (350-422)||(6778277-6778349)
[»] chr1 (10 HSPs)
chr1 (110-441)||(40553873-40554201)
chr1 (301-441)||(40554628-40554768)
chr1 (315-447)||(31390113-31390245)
chr1 (323-422)||(36233297-36233397)
chr1 (323-422)||(36233951-36234051)
chr1 (278-422)||(24157603-24157748)
chr1 (323-422)||(20189392-20189492)
chr1 (278-422)||(20190980-20191125)
chr1 (339-422)||(20759095-20759175)
chr1 (278-420)||(48463905-48464050)
[»] scaffold0321 (1 HSPs)
scaffold0321 (100-442)||(5189-5528)
[»] chr2 (9 HSPs)
chr2 (100-441)||(44793181-44793522)
chr2 (301-441)||(44792585-44792725)
chr2 (323-422)||(22299679-22299779)
chr2 (323-422)||(22300491-22300591)
chr2 (278-422)||(18535852-18535997)
chr2 (339-422)||(31974104-31974188)
chr2 (323-422)||(24806879-24806980)
chr2 (323-422)||(24808735-24808836)
chr2 (365-422)||(24806078-24806136)
[»] scaffold0002 (1 HSPs)
scaffold0002 (110-441)||(375099-375422)
[»] chr7 (9 HSPs)
chr7 (278-422)||(7842665-7842810)
chr7 (278-422)||(9647485-9647630)
chr7 (325-422)||(40998816-40998914)
chr7 (278-422)||(23446651-23446796)
chr7 (339-422)||(41000689-41000774)
chr7 (323-422)||(9596031-9596131)
chr7 (323-422)||(9646994-9647094)
chr7 (372-422)||(24790111-24790161)
chr7 (372-422)||(24790160-24790210)
[»] chr5 (9 HSPs)
chr5 (278-422)||(244988-245133)
chr5 (278-422)||(29949576-29949721)
chr5 (278-422)||(29951214-29951359)
chr5 (339-422)||(21352698-21352782)
chr5 (323-422)||(38936706-38936806)
chr5 (348-422)||(21352595-21352670)
chr5 (323-422)||(16780601-16780699)
chr5 (306-393)||(23660939-23661027)
chr5 (306-393)||(23797543-23797631)
[»] chr3 (10 HSPs)
chr3 (278-422)||(5554341-5554486)
chr3 (278-422)||(23460191-23460336)
chr3 (278-443)||(47418526-47418692)
chr3 (278-422)||(5553187-5553332)
chr3 (278-422)||(25531625-25531770)
chr3 (323-416)||(16022747-16022841)
chr3 (278-422)||(16346623-16346768)
chr3 (339-444)||(47566443-47566548)
chr3 (339-414)||(2683482-2683557)
chr3 (323-374)||(25532826-25532877)
[»] scaffold0096 (1 HSPs)
scaffold0096 (323-422)||(22388-22488)
[»] scaffold0025 (1 HSPs)
scaffold0025 (278-422)||(54845-54991)
[»] scaffold0146 (1 HSPs)
scaffold0146 (278-422)||(31580-31725)
[»] scaffold0021 (2 HSPs)
scaffold0021 (339-422)||(17646-17730)
scaffold0021 (339-422)||(27177-27261)
[»] scaffold0269 (1 HSPs)
scaffold0269 (323-422)||(1964-2062)
[»] scaffold0018 (1 HSPs)
scaffold0018 (323-422)||(679-780)
[»] scaffold0026 (2 HSPs)
scaffold0026 (339-422)||(673-757)
scaffold0026 (339-422)||(86572-86656)
[»] scaffold0013 (1 HSPs)
scaffold0013 (323-422)||(241035-241135)
[»] chr6 (2 HSPs)
chr6 (372-422)||(12037064-12037114)
chr6 (374-444)||(12036983-12037053)
[»] scaffold0359 (1 HSPs)
scaffold0359 (367-422)||(8902-8957)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 96 - 492
Target Start/End: Complemental strand, 21377517 - 21377120
Alignment:
Q  96 ctaactcctcctcattatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatccc 195  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21377517 ctaactcctccacattatgctcttcaactactcaaattaattgtgtttcacttcttttgcttcagctccttcatttaatcacgtcatccactttaatccc 21377418  T
Q  196 attttacaccatgatatatgccgattttgcttctgagtccaacatatgagttgcagatggttt-gtaccctttccatcgcttcaaagatcacctcaatca 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||| ||| |||||||||||||| |||||||||||||||||||||    
T  21377417 attttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgattttgtaccctttccatcacttcaaagatcacctcaatca 21377318  T
Q  295 gagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccata 394  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21377317 gagttgcaaagctctagatatgatgaatataagacagatacataatgacctacgaaaataaaaatctgaaccaaaaataatttggttcttttattccata 21377218  T
Q  395 ttgactttattattcttgtcaagagagaatatcttaagatcgcatcaattgttgtgttttccaccaattaaagaatttagttgattaatttgatttcg 492  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21377217 ttgactttattattcttgtcaagggagaatatcttaggatcgcatcaattgttgtgttttccaccaataaaagaatttagttgattaatttgatttcg 21377120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 100 - 435
Target Start/End: Original strand, 18281117 - 18281453
Alignment:
Q  100 ctcctcctcattatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattt 199  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||  |||||||||||||||| |||||||||||||||  |||| |||||||||||||    
T  18281117 ctcctccacattatgctcttcaactactaaaattaattgtgtttcagctcttttgcttcagctccttcatttaatcacgttctccagtttaatcccattt 18281216  T
Q  200 tacaccatgatatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagt 298  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  || |||||  |||||||||||| || ||||||||||||||||| |||| ||||    
T  18281217 tacaccatgatatatgccgatttttcttctgagtccaacatatgaaatgtagatgaatttgtacccttttcaacgcttcaaagatcacctaaatcggagt 18281316  T
Q  299 tgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattga 398  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||| |||    
T  18281317 tgtagagctctagatatgatgaatgcaagacagatacataatgacctacgaaaataactatttgaaccaaaaataatttgattcttttattcgataatga 18281416  T
Q  399 ctttattattcttgtcaagagagaatatcttaagatc 435  Q
    ||||||||||||||| ||| ||||| |||||| ||||    
T  18281417 ctttattattcttgtaaagggagaacatcttaggatc 18281453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 110 - 441
Target Start/End: Complemental strand, 11098799 - 11098469
Alignment:
Q  110 ttatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattttacaccatga 209  Q
    |||||||||||||||||    |||||||| ||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  11098799 ttatgctcttcaactac----attaattgtgtttcacctcttttgcttcagctccttcatttaatcacgtcctccagtttaatcccattttacaccatga 11098704  T
Q  210 tatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagttgcagagctc 308  Q
    |||||||||||||||||| ||||||||||||||||  || |||||  ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  11098703 tatatgccgattttgcttatgagtccaacatatgaaatgtagatgaatttgtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctc 11098604  T
Q  309 tagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaa--taatttggttcttttattccatattgactttatta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||| ||||||||||||||| ||| |||||||    
T  11098603 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaaataaatttgattcttttattccataatgaatttatta 11098504  T
Q  407 ttcttgtcaagagagaatatcttaagatcgcatca 441  Q
    ||||||| ||| ||||| |||||| |||| |||||    
T  11098503 ttcttgtaaagggagaacatcttaggatcacatca 11098469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 100 - 441
Target Start/End: Original strand, 42872804 - 42873142
Alignment:
Q  100 ctcctcctcattatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattt 199  Q
    ||||||| | |||||||||||||||||    ||||| || ||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||    
T  42872804 ctcctccactttatgctcttcaactac----attaactgtgtttcacctcttttgcttcagctccttcatttaatcacgtcctccagtttaatcccattt 42872899  T
Q  200 tacaccatgatatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagt 298  Q
    |||||||||||||||||||||||||||| | ||||||||||||||  || |||||  ||||||||||||||| |||||||||||||||||||||| |  |    
T  42872900 tacaccatgatatatgccgattttgcttataagtccaacatatgaaatgtagatgaatttgtaccctttccaacgcttcaaagatcacctcaatcgggat 42872999  T
Q  299 tgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattga 398  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||    
T  42873000 tccagagctctagatatgatgaatacaagacatatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatga 42873099  T
Q  399 ctttattattcttgtcaagagagaatatcttaagatcgcatca 441  Q
     |||||||||||||| ||| ||||| |||||| |||| |||||    
T  42873100 atttattattcttgtaaagggagaacatcttaggatcacatca 42873142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 103 - 441
Target Start/End: Complemental strand, 22473988 - 22473649
Alignment:
Q  103 ctcctcattatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattttac 202  Q
    |||||||| ||||||||||| |  |||||||||||| ||||||  |||||||||||||||| || ||||||||||||| | |||||||||||||||||||    
T  22473988 ctcctcatcatgctcttcaatttttcaaattaattgtgtttcatctcttttgcttcagctccttaatttaatcacgtccttcactttaatcccattttac 22473889  T
Q  203 accatgatatatgccgattttgcttctgagtccaacatatgagttgcagat-ggtttgtaccctttccatcgcttcaaagat-cacctcaatcagagttg 300  Q
    || ||||||||||| |||||| ||||||||| ||||||||||  || ||||   |||||||| |||||| |||||||||||| |||||||||||||||||    
T  22473888 actatgatatatgcagattttccttctgagtacaacatatgaaatgtagataattttgtaccatttccaacgcttcaaagatccacctcaatcagagttg 22473789  T
Q  301 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgact 400  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||||||| |||||    
T  22473788 cagagctctaaatatgatgaatacaacacatatacataatgaccaacgaaaataacaatttgaaccaaaaa-aaattggttcttttattccataatgact 22473690  T
Q  401 ttattattcttgtcaagagagaatatcttaagatcgcatca 441  Q
    ||||||||| |||||||  | || |||||| ||||||||||    
T  22473689 ttattattcatgtcaaggaataacatcttaggatcgcatca 22473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 323 - 443
Target Start/End: Original strand, 9399214 - 9399335
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  9399214 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaagagag 9399313  T
Q  422 aatatcttaagatcgcatcaat 443  Q
    |  || ||| |||| |||||||    
T  9399314 ataattttaggatcacatcaat 9399335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 13518510 - 13518655
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  13518510 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 13518609  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  13518610 tggttcttttattccacaatgactttattattcttgtcaagagaga 13518655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 15018190 - 15018335
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  15018190 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 15018289  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  15018290 tggttcttttattccacaatgactttattattcttgtcaagagaga 15018335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 15019830 - 15019975
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  15019830 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 15019929  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  15019930 tggttcttttattccacaatgactttattattcttgtcaagagaga 15019975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 422
Target Start/End: Original strand, 39488747 - 39488845
Alignment:
Q  325 aagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||| | || ||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||| ||| |||||||||||| ||||||||||    
T  39488747 aagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgaatttattattcttttcaagagaga 39488845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 13518019 - 13518119
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || |||| |||||||||||||| |||||||| ||| | |||||||||||||||||||| | | ||||||||||| ||||||||||||    
T  13518019 acaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattattattgtcaagagag 13518118  T
Q  422 a 422  Q
    |    
T  13518119 a 13518119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 46690581 - 46690497
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||| ||| ||   ||||| ||||| |||||||||||||| | |||||||||||||||| ||||||||||    
T  46690581 atgacctacgaaaataaaactttaaatttaaaattaatttagttcttttattccacactgactttattattcttatcaagagaga 46690497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 394
Target Start/End: Original strand, 24663997 - 24664088
Alignment:
Q  306 ctctagatatgatgaatacaagacagatacataatgaccta--cgaaaataaaaa-tttgaaccaaaaataatttggttcttttattccata 394  Q
    |||||||||||   || |||||||||||| ||||||| |||  |||| ||||||| ||||||||||||||||||||||||| |||| |||||    
T  24663997 ctctagatatggacaaaacaagacagatatataatgatctatacgaatataaaaactttgaaccaaaaataatttggttctcttatgccata 24664088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 393
Target Start/End: Complemental strand, 19457665 - 19457617
Alignment:
Q  346 acgaaaataaaaatttgaaccaaaaataatttggttc-ttttattccat 393  Q
    |||||||||| | |||||||||||| ||||||||||| |||||||||||    
T  19457665 acgaaaataacactttgaaccaaaattaatttggttcattttattccat 19457617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 100 - 441
Target Start/End: Original strand, 11170 - 11511
Alignment:
Q  100 ctcctcctcattatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattt 199  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||||  |||||||||||||||| |||||||||||||||| |||| |||||||||||||    
T  11170 ctcctccacattatgctcttaaactactcaaattaattgtgtttcagctcttttgcttcagctccttcatttaatcacgtcctccagtttaatcccattt 11269  T
Q  200 tacaccatgatatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||  || |||||  ||||||||||||||| |||||||||||||||||||||| ||||    
T  11270 tacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaatttgtaccctttccaacgcttcaaagatcacctcaatcggagt 11369  T
Q  299 tgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattga 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | |||    
T  11370 tgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattcca-aatga 11468  T
Q  399 ctttattattcttgtcaagagagaatatcttaagatcgcatca 441  Q
    ||||| ||||||||| ||| ||||| |||||| |||| |||||    
T  11469 ctttaatattcttgtaaagggagaacatcttaggatcacatca 11511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 100 - 441
Target Start/End: Complemental strand, 4537 - 4195
Alignment:
Q  100 ctcctcctcattatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattt 199  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||||||||||| |||| |||||||||||||    
T  4537 ctcctccacattatgctcttcaactactcaaattaattgtgtttcagctcttttgcttcagctccttcatttaatcacgtcctccagtttaatcccattt 4438  T
Q  200 tacaccatgatatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagt 298  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||  || |||||  ||||||||||||| | ||||| |||||||||||||||| ||||    
T  4437 tacaccatgatatctgccgattttgcttctgagtcaaacatatgaaatgtagatgaatttgtaccctttcgaacgctttaaagatcacctcaatcggagt 4338  T
Q  299 tgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattga 398  Q
    || ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||    
T  4337 tgtagagctctaaatatgatgaatacaatacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatga 4238  T
Q  399 ctttattattcttgtcaagagagaatatcttaagatcgcatca 441  Q
    ||||||||||||||| ||| ||||| |||||| |||| |||||    
T  4237 ctttattattcttgtaaagggagaacatcttaggatcacatca 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 100 - 435
Target Start/End: Original strand, 13277 - 13606
Alignment:
Q  100 ctcctcctcattatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattt 199  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||       | |||||||||||||    
T  13277 ctcctccacattatgcacttcaactactcaaattaattgtgtttcacctcttttgcttcagctccttcatttaatcac-------agtttaatcccattt 13369  T
Q  200 tacaccatgatatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagt 298  Q
    ||||||||||||||||||||||||||||||||  |||||||||||  || |||||  ||||||||||||||| |||||||||||||||||||||| ||||    
T  13370 tacaccatgatatatgccgattttgcttctgaacccaacatatgaaatgtagatgaatttgtaccctttccaacgcttcaaagatcacctcaatcggagt 13469  T
Q  299 tgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattga 398  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  13470 tgtagagctctagatatgatgaatacaaaacagatacataatgacctacgaaaataaaaatttgaacccaaaataatttggttcttttattccataatga 13569  T
Q  399 ctttattattcttgtcaagagagaatatcttaagatc 435  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  13570 ctttattattcttgtcaagggagaatatcttaggatc 13606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 100 - 441
Target Start/End: Complemental strand, 17857471 - 17857133
Alignment:
Q  100 ctcctcctcattatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattt 199  Q
    ||||||| | |||||||||||||||||    |||||||| ||||||| |||||||||| ||||| |||||||||||||||| |||| |||||||||||||    
T  17857471 ctcctccactttatgctcttcaactac----attaattgtgtttcacctcttttgctttagctccttcatttaatcacgtcctccagtttaatcccattt 17857376  T
Q  200 tacaccatgatatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||  || |||||  ||||||||||||||| |||||||||||||||||||||| ||||    
T  17857375 tacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaatttgtaccctttccaacgcttcaaagatcacctcaatcggagt 17857276  T
Q  299 tgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattga 398  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||    
T  17857275 tccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatga 17857176  T
Q  399 ctttattattcttgtcaagagagaatatcttaagatcgcatca 441  Q
     |||||||||||||| ||| ||||| |||||| |||| |||||    
T  17857175 atttattattcttgtaaagggagaacatcttaggatcacatca 17857133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 109 - 441
Target Start/End: Original strand, 23016475 - 23016808
Alignment:
Q  109 attatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattttacaccatg 208  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  23016475 attatgctcttcaactactcaaattaattgtgtttcagctcttttgcttcagctccttcatttaatcacgtcctccagtttaatcccattttacaccatg 23016574  T
Q  209 atatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagttgcagagct 307  Q
    ||||||||||||||||||| ||||||||||||||||  || |||||  ||||||||||||||| ||||||||| |||||||||||  |||||||||| ||    
T  23016575 atatatgccgattttgcttatgagtccaacatatgaaatgtagatgaatttgtaccctttccaacgcttcaaatatcacctcaattggagttgcagaact 23016674  T
Q  308 ctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||  ||||||| |||    
T  23016675 ctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgatttttttattccataacgactttaatat 23016774  T
Q  408 tcttgtcaagagagaatatcttaagatcgcatca 441  Q
    |||||| ||| ||||| |||||| |||| |||||    
T  23016775 tcttgtaaagggagaacatcttaggatcacatca 23016808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 301 - 444
Target Start/End: Original strand, 23016334 - 23016477
Alignment:
Q  301 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgact 400  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||    
T  23016334 cagagctctagatatgatgaatacaagacaaatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgact 23016433  T
Q  401 ttattattcttgtcaagagagaatatcttaagatcgcatcaatt 444  Q
    ||| ||||||||| ||| ||||| |||||| |||| ||||||||    
T  23016434 ttaatattcttgtaaagggagaacatcttaggatcacatcaatt 23016477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 8366196 - 8366096
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  8366196 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattattcttgtcaagagag 8366097  T
Q  422 a 422  Q
    |    
T  8366096 a 8366096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 17278270 - 17278369
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||| | || ||||| ||||||||||||  || || |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  17278270 acaagacagacatatcatgacttacgaaaataaactttggacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaagagaga 17278369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 17277543 - 17277398
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||| | | || ||||||||| ||||||||| |||||||| ||||| ||||    
T  17277543 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacaaaaataaaactttgaacccaaaattaatt 17277444  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    || ||||||||||||| | |||||||||||||||||||||||||||    
T  17277443 tgattcttttattccacaatgactttattattcttgtcaagagaga 17277398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 17277716 - 17277666
Alignment:
Q  372 taatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17277716 taatttggttcttttattccataatgactttattattcttgtcaagagaga 17277666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 6778277 - 6778349
Alignment:
Q  350 aaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||| || ||||||||| ||||| ||||||||||||||| | | |||||||||||||||| ||| ||||    
T  6778277 aaataaaacttagaaccaaaattaattcggttcttttattccacaataactttattattcttgtaaagggaga 6778349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 110 - 441
Target Start/End: Complemental strand, 40554201 - 40553873
Alignment:
Q  110 ttatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattttacaccatga 209  Q
    |||||||||||||||||    |||||||| ||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  40554201 ttatgctcttcaactac----attaattgtgtttcacctcttttgcttcagctccttcatttaatcacgtcctccagtttaatcccattttacaccatga 40554106  T
Q  210 tatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagttgcagagctc 308  Q
    ||||||||||||||||||||||||||| |||||||  || |||||  ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  40554105 tatatgccgattttgcttctgagtccagcatatgaaatgtagatgaatttgtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctc 40554006  T
Q  309 tagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattatt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  40554005 tagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattatt 40553906  T
Q  409 cttgtcaagagagaatatcttaagatcgcatca 441  Q
    ||||| ||| ||||| |||||| |||| |||||    
T  40553905 cttgtaaagggagaacatcttaggatcacatca 40553873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 301 - 441
Target Start/End: Original strand, 40554628 - 40554768
Alignment:
Q  301 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |    
T  40554628 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaat 40554727  T
Q  401 ttattattcttgtcaagagagaatatcttaagatcgcatca 441  Q
    ||||||||||||| ||| ||||| |||||| |||| |||||    
T  40554728 ttattattcttgtaaagggagaacatcttaggatcacatca 40554768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 315 - 447
Target Start/End: Complemental strand, 31390245 - 31390113
Alignment:
Q  315 tgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattattcttgtc 414  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||     
T  31390245 tgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgta 31390146  T
Q  415 aagagagaatatcttaagatcgcatcaattgtt 447  Q
    ||| ||||| |||||| |||| ||||| |||||    
T  31390145 aagggagaacatcttaggatcacatcagttgtt 31390113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 36233397 - 36233297
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  36233397 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaagagag 36233298  T
Q  422 a 422  Q
    |    
T  36233297 a 36233297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 36233951 - 36234051
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  36233951 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaagagag 36234050  T
Q  422 a 422  Q
    |    
T  36234051 a 36234051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 24157603 - 24157748
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  24157603 aaagatcacctcaaacggacatccagagctccagatatagctaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 24157702  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
     ||||||||||||||||| |||||||||||||||| ||||||||||    
T  24157703 aggttcttttattccataatgactttattattcttttcaagagaga 24157748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 20189392 - 20189492
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaa-ccaaaaataatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| | ||||||||||||| || |||||||||    
T  20189392 acaagacagacatatcatgacctacgaaaataaaactttgaaaccaaaattaatttggttcttttattccacaatgactttattatttttttcaagagag 20189491  T
Q  422 a 422  Q
    |    
T  20189492 a 20189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 20190980 - 20191125
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | || ||||| ||||||  | || |||||||||| | || ||||| ||||||||||||| |||||||| ||||| ||||    
T  20190980 aaagatcacctcaaacggacatccaaagctccagatatagtcaaaacaagacagacatatcatgacatacgaaaataaaactttgaacccaaaattaatt 20191079  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
     ||||||||||||| ||| |||||||||||||||| ||||||||||    
T  20191080 aggttcttttattctataatgactttattattcttttcaagagaga 20191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 20759175 - 20759095
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||    || | |||||||||||||||||||||| ||||    
T  20759175 atgacctacgaaaataaaactttgaaccaaaattaatttggttcttttt---cacaatgactttattattcttgtcaagggaga 20759095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 420
Target Start/End: Original strand, 48463905 - 48464050
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataattt 377  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||| ||||||||| |||||||| ||||| ||||    
T  48463905 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaa-tttgaacccaaaattattt 48464003  T
Q  378 -ggttcttttattccatattgact---ttattattcttgtcaagaga 420  Q
     ||||||||||||||| | | |||   ||||||||||||||||||||    
T  48464004 tggttcttttattccacaataactttattattattcttgtcaagaga 48464050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 100 - 442
Target Start/End: Complemental strand, 5528 - 5189
Alignment:
Q  100 ctcctcctcattatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattt 199  Q
    ||||||| | |||||||||||||||||    |||||||| ||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||    
T  5528 ctcctccactttatgctcttcaactac----attaattgtgtttcacctcttttgcttcagctccttcatttaatcacgtcctccagtttaatcccattt 5433  T
Q  200 tacaccatgatatatgccgattttgcttctgagtccaacatatgagttgcagatgg-tttgtaccctttccatcgcttcaaagatcacctcaatcagagt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||  || |||||  ||||||||||||||| |||||||||||||||||||||| ||||    
T  5432 tacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaatttgtaccctttccaacgcttcaaagatcacctcaatcggagt 5333  T
Q  299 tgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattga 398  Q
    | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||    
T  5332 tccagagttctagatatgatgaatacaagacacatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatga 5233  T
Q  399 ctttattattcttgtcaagagagaatatcttaagatcgcatcaa 442  Q
     |||||||||||||| ||| ||||| |||||| |||| ||||||    
T  5232 atttattattcttgtaaagggagaacatcttaggatcacatcaa 5189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 100 - 441
Target Start/End: Original strand, 44793181 - 44793522
Alignment:
Q  100 ctcctcctcattatgctcttcaactactcaaattaattgcgtttcac---ttcttttgcttcagctcattcatttaatcacgtcatccactttaatccca 196  Q
    ||||||| | |||||||||||||||||    |||||||| |||||||   ||  |||||| |||||| |||||||||||||||| |||| ||||||||||    
T  44793181 ctcctccactttatgctcttcaactac----attaattgtgtttcacctttttatttgctccagctccttcatttaatcacgtcctccagtttaatccca 44793276  T
Q  197 ttttacaccatgatatatgccgattttgcttctgagtccaacatatgagttgcagatg-gtttgtaccctttccatcgcttcaaagatcacctcaatcag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  || |||||  ||||||||||||||| |||||||||||||||||||||| |    
T  44793277 ttttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaatttgtaccctttccaacgcttcaaagatcacctcaatcgg 44793376  T
Q  296 agttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatat 395  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||     
T  44793377 agttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataa 44793476  T
Q  396 tgactttattattcttgtcaagagagaatatcttaagatcgcatca 441  Q
    ||| |||||||||||||| ||| ||||| |||||| |||| |||||    
T  44793477 tgaatttattattcttgtaaagggagaacatcttaggatcacatca 44793522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 301 - 441
Target Start/End: Complemental strand, 44792725 - 44792585
Alignment:
Q  301 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| ||| |    
T  44792725 cagagctctagatatgatgaatacaagacagatacataatgacctacaaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaat 44792626  T
Q  401 ttattattcttgtcaagagagaatatcttaagatcgcatca 441  Q
    ||||||||||||| ||| ||||| |||||| |||| |||||    
T  44792625 ttattattcttgtaaagggagaacatcttaggatcacatca 44792585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 22299779 - 22299679
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  22299779 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattattcttgtcaagagag 22299680  T
Q  422 a 422  Q
    |    
T  22299679 a 22299679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 22300491 - 22300591
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  22300491 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattattcttgtcaagagag 22300590  T
Q  422 a 422  Q
    |    
T  22300591 a 22300591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 18535852 - 18535997
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| ||||| ||||    
T  18535852 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatt 18535951  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||    
T  18535952 tggttcttttattccacaatgactttattattcttttcaagagaga 18535997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 31974104 - 31974188
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  31974104 atgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattattcttttcaagagaga 31974188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 24806879 - 24806980
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgac-tttattattcttgtcaagaga 420  Q
    |||||||||| | || ||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| | |||| |||||||||||||||||||||    
T  24806879 acaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttttattattcttgtcaagaga 24806978  T
Q  421 ga 422  Q
    ||    
T  24806979 ga 24806980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 24808735 - 24808836
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactt-tattattcttgtcaagaga 420  Q
    |||||||||| | || ||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  24808735 acaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttctattattcttgtcaagaga 24808834  T
Q  421 ga 422  Q
    ||    
T  24808835 ga 24808836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 24806136 - 24806078
Alignment:
Q  365 ccaaaaataatttggttcttttattccatattgacttt-attattcttgtcaagagaga 422  Q
    |||||| ||| ||||||||||||||||| | ||||||| ||||||||||||||||||||    
T  24806136 ccaaaattaaattggttcttttattccacaatgacttttattattcttgtcaagagaga 24806078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 110 - 441
Target Start/End: Original strand, 375099 - 375422
Alignment:
Q  110 ttatgctcttcaactactcaaattaattgcgtttcacttcttttgcttcagctcattcatttaatcacgtcatccactttaatcccattttacaccatga 209  Q
    ||||||||||||||||    ||||||||| ||||||  ||||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  375099 ttatgctcttcaacta----aattaattgtgtttcatctctttcgcttcagctccttcatttaatcacgtcctccagtttaatcccattttacaccatga 375194  T
Q  210 tatatgccgattttgcttctgagtccaacatatgagttgcagatggtttgtaccctttccatcgcttcaaagatcacctcaatcagagttgcagagctct 309  Q
    |||||||||||||||||||||||||||||||||||  || |     ||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  375195 tatatgccgattttgcttctgagtccaacatatgaaatgtaa----tttgtaccctttccaacgcttcaaagatcacctcaatcagagttccagagctct 375290  T
Q  310 agatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattattc 409  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  375291 agatatgaggaatacaagacagatacataatgacctacaaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattc 375390  T
Q  410 ttgtcaagagagaatatcttaagatcgcatca 441  Q
    |||| ||| ||||| |||||| |||| |||||    
T  375391 ttgtaaagggagaacatcttaggatcacatca 375422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 7842810 - 7842665
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | ||||||||||||||| |  || |||| ||||| | ||  |||||||||||||||||| |||||||| ||||| ||||    
T  7842810 aaagatcacctcaaacggacatccagagctctagatataaccaaaacaaaacagacatatcttgacctacgaaaataaaactttgaacccaaaattaatt 7842711  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  7842710 tggttcttttattccacaatgactttattattcttgtcaagagaga 7842665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 9647485 - 9647630
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  9647485 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 9647584  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  9647585 tggttcttttattccacaatgactttattattcttgtcaagagaga 9647630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 325 - 422
Target Start/End: Original strand, 40998816 - 40998914
Alignment:
Q  325 aagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||| | || ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  40998816 aagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaagagaga 40998914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 23446796 - 23446651
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  23446796 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 23446697  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||    
T  23446696 tggttcttttattccacaatgactttattattcttttcaagagaga 23446651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 41000689 - 41000774
Alignment:
Q  339 atgacctacgaaaa-taaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  41000689 atgacctacgaaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaagagaga 41000774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 9596031 - 9596131
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || |||| |||||||||||||| |||||||| ||| | |||||||||||||||||||| | | ||||||||||| ||||||||||||    
T  9596031 acaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattattattgtcaagagag 9596130  T
Q  422 a 422  Q
    |    
T  9596131 a 9596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 9646994 - 9647094
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || |||| |||||||||||||| |||||||| ||| | |||||||||||||||||||| | | ||||||||||| ||||||||||||    
T  9646994 acaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattattattgtcaagagag 9647093  T
Q  422 a 422  Q
    |    
T  9647094 a 9647094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 24790161 - 24790111
Alignment:
Q  372 taatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  24790161 taatttggttcttttattccacaatgactttattattcttgtcaagagaga 24790111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 24790160 - 24790210
Alignment:
Q  372 taatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  24790160 taatttggttcttttattccacaatgactttattattcttgtcaagagaga 24790210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 244988 - 245133
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  244988 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 245087  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  245088 tggttcttttattccacaatgactttattattcttgtcaagagaga 245133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 29949721 - 29949576
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  29949721 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 29949622  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  29949621 tggttcttttattccacaatgactttattattcttgtcaagagaga 29949576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 29951359 - 29951214
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  29951359 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 29951260  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  29951259 tggttcttttattccacaatgactttattattcttgtcaagagaga 29951214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 21352698 - 21352782
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  21352698 atgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattattcttttcaagagaga 21352782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 38936806 - 38936706
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaata-atttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| |||||||| |||||  |||||||||||||||| || | ||||||||||||||||||||||||||    
T  38936806 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattgatttggttcttttatttcacaatgactttattattcttgtcaagagag 38936707  T
Q  422 a 422  Q
    |    
T  38936706 a 38936706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 21352670 - 21352595
Alignment:
Q  348 gaaaataaaaatttgaa-ccaaaaataatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||| |||||| |||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  21352670 gaaaataaaactttgaatccaaaattaattaggttcttttattccataatgactttattattcttttcaagagaga 21352595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 16780699 - 16780601
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||| | |||| |||| ||||||||||||||  ||||||||||| |||||   |||||||||| || | ||||||||||||| || ||||||||||    
T  16780699 acaagacaaacacatcatgaactacgaaaataaaacattgaaccaaaattaattcaattcttttatt-cacaatgactttattatttttatcaagagaga 16780601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 23661027 - 23660939
Alignment:
Q  306 ctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttc-ttttattccat 393  Q
    ||||||||||||  || |||||||||  | ||||| |||||||||||||| | ||  |||||||| ||||||||||| |||||||||||    
T  23661027 ctctagatatgacaaaaacaagacagtcatataatcacctacgaaaataatacttgaaaccaaaattaatttggttcattttattccat 23660939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 23797543 - 23797631
Alignment:
Q  306 ctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataatttggttc-ttttattccat 393  Q
    ||||||||||||  || |||||||||  | ||||| |||||||||||||| | ||  |||||||| ||||||||||| |||||||||||    
T  23797543 ctctagatatgacaaaaacaagacagtcatataatcacctacgaaaataatacttgaaaccaaaattaatttggttcattttattccat 23797631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 5554341 - 5554486
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  5554341 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatt 5554440  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  5554441 tggttcttttattccacaatgactttattattcttgtcaagagaga 5554486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 23460336 - 23460191
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | |||||||||||||||||||||| |||||||| ||||| ||||    
T  23460336 aaagatcacctcaaacggatatccagagctccagatatagccaaaacaagacagacatataatgacctacgaaaataaaactttgaacccaaaattaatt 23460237  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||| | | |||||||||||||||||||||||||||    
T  23460236 tggttcttttattctacaatgactttattattcttgtcaagagaga 23460191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 278 - 443
Target Start/End: Original strand, 47418526 - 47418692
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| ||||| ||||    
T  47418526 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatt 47418625  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagagaatatcttaagatcgcatcaat 443  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||  || ||| |||| |||||||    
T  47418626 tggttcttttattccacaatgactttattattcttttcaagagagagaatattaggatcacatcaat 47418692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 5553332 - 5553187
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||| ||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  5553332 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaataaaattttgaacccaaaattaatt 5553233  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||| || | |||||||||||||||||||||||||||    
T  5553232 tggttcttttatttcacaatgactttattattcttgtcaagagaga 5553187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 25531770 - 25531625
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaa-ccaaaaataatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||  | || |||||||||| | || ||||||||||||||||||| |||||| |||||| |||||    
T  25531770 aaagatcacctcaaacggacatccagagctccagatatagtcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatt 25531671  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||| ||| | | ||| |||||||||||||||||||||||    
T  25531670 tggttctttttttctacaatgaatttattattcttgtcaagagaga 25531625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 416
Target Start/End: Original strand, 16022747 - 16022841
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaa 416  Q
    |||||||||| | || ||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  16022747 acaagacagacatatcatgacctacgaaaataaaactttggacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaa 16022841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 16346768 - 16346623
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| ||||| ||||    
T  16346768 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatt 16346669  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||| || |||||||    
T  16346668 tggttcttttattccacaatgactttattattcttttccagagaga 16346623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 444
Target Start/End: Complemental strand, 47566548 - 47566443
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattattcttgtcaagagagaatatcttaagatcgca 438  Q
    |||| |||||||||||||| ||| || ||||| ||| |   ||||||||||||| | ||||||||||||||||||||||| |||  || ||| |||| ||    
T  47566548 atgatctacgaaaataaaattttaaatcaaaattaaatcaattcttttattccacaatgactttattattcttgtcaagaaagagaattttaggatcaca 47566449  T
Q  439 tcaatt 444  Q
    ||||||    
T  47566448 tcaatt 47566443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 2683557 - 2683482
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaataatttggttcttttattccatattgactttattattcttgtc 414  Q
    |||| |||| ||||||| | ||||||| |||| ||||||| || |||||||||| | ||| |||||||||||||||    
T  2683557 atgatctacaaaaataacactttgaacaaaaattaatttgatttttttattccaaaatgattttattattcttgtc 2683482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 25532826 - 25532877
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaataa 374  Q
    |||||||||| | || ||||||||||||||||||| |||||| |||||||||    
T  25532826 acaagacagacatatcatgacctacgaaaataaaactttgaatcaaaaataa 25532877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 22488 - 22388
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  22488 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaagagag 22389  T
Q  422 a 422  Q
    |    
T  22388 a 22388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 54991 - 54845
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaa-ccaaaaataatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||   ||| |||||||||| | |  ||||||||||||||||||| |||||| |||||| |||||    
T  54991 aaagatcacctcaaacggacatccagagctccagatatagcgaaaacaagacagacatagcatgacctacgaaaataaaactttgaacccaaaattaatt 54892  T
Q  377 tggttcttttattccatattgac-tttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||    
T  54891 tggttcttttattccacaatgacttttattattcttgtcaagagaga 54845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 31725 - 31580
Alignment:
Q  278 aaagatcacctcaatcagagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatt 376  Q
    |||||||||||||| | ||  | |||||||| ||||||    || |||||||||| | || ||||||||||||||||| | |||||||| ||||| ||||    
T  31725 aaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatt 31626  T
Q  377 tggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||    
T  31625 tggttcttttattccacaatgactttattattcttttcaagagaga 31580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 17730 - 17646
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||||||||| | | |||||||||||||||||||||||||||    
T  17730 atgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaacactgactttattattcttgtcaagagaga 17646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 27261 - 27177
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||||||||| | | |||||||||||||||||||||||||||    
T  27261 atgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaacactgactttattattcttgtcaagagaga 27177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 1964 - 2062
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    ||||||||||||  | ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| | |||| |||||||||||||| ||||||    
T  1964 acaagacagata--tcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacattattattcttgtcgagagag 2061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 323 - 422
Target Start/End: Original strand, 679 - 780
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactt-tattattcttgtcaagaga 420  Q
    |||||||||| | || ||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  679 acaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttctattattcttgtcaagaga 778  T
Q  421 ga 422  Q
    ||    
T  779 ga 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 673 - 757
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||| |||||||| ||||| |||||| |||||||||| |  | |||||||||||||||||||||||||||    
T  673 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttatttctcaatgactttattattcttgtcaagagaga 757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 86656 - 86572
Alignment:
Q  339 atgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||| |||||||||  ||||||| ||||| |||||||||| ||||||||| | ||||||||||||||||||||| |||||    
T  86656 atgacctacaaaaataaaacattgaacccaaaattaatttggttcctttattccacaatgactttattattcttgtcaaaagaga 86572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 241135 - 241035
Alignment:
Q  323 acaagacagatacataatgacctacgaaaataaaaatttgaaccaaaaat-aatttggttcttttattccatattgactttattattcttgtcaagagag 421  Q
    |||||||||| | || ||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||   | |||||||||||||||||| |||||||    
T  241135 acaagacagacatattatgacctacgaaaataaaactttaaacccaaaattaatttggttcttttattctgcaatgactttattattcttgttaagagag 241036  T
Q  422 a 422  Q
    |    
T  241035 a 241035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 12037064 - 12037114
Alignment:
Q  372 taatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  12037064 taatttggttcttttattccacaatgactttattattcttgtcaagagaga 12037114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 444
Target Start/End: Complemental strand, 12037053 - 12036983
Alignment:
Q  374 atttggttcttttattccatattgactttattattcttgtcaagagagaatatcttaagatcgcatcaatt 444  Q
    ||||||||||||||||||| | |||||||||||||||||| ||||||||  || ||| |||| ||||||||    
T  12037053 atttggttcttttattccacaatgactttattattcttgttaagagagagaattttaggatcacatcaatt 12036983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 8902 - 8957
Alignment:
Q  367 aaaaataatttggttcttttattccatattgactttattattcttgtcaagagaga 422  Q
    |||| ||| ||||||||| ||||||| | |||||||||||||||||||||||||||    
T  8902 aaaattaacttggttcttatattccacaatgactttattattcttgtcaagagaga 8957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University