View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0950_low_50 (Length: 239)
Name: NF0950_low_50
Description: NF0950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0950_low_50 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 7247228 - 7247384
Alignment:
| Q |
65 |
gaacctgtgatgcttctgnnnnnnnctctgcacctgcctttgttgttgctgctgctgcccttgtctctgacaccttttacagaaattcataaattaatgt |
164 |
Q |
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| T |
7247228 |
gaacctgtgatgcttctgtttttttctctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacacaaattcataaactaatgt |
7247327 |
T |
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| Q |
165 |
acaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttggttttgctgt |
221 |
Q |
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| T |
7247328 |
acaaagaaaaaattaaatgcaaatgcatgttagtccatgcacctttggttttgctgt |
7247384 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 25321474 - 25321379
Alignment:
| Q |
117 |
tgctgcccttgtctctgacaccttttacagaaattcataaattaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
212 |
Q |
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| T |
25321474 |
tgctgcctttgtctctaacatcttttacaaaaattcactaataaatgtacaaataaaaactaaatttcaaatgcatgttggtccattcacctttgg |
25321379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 18409 - 18505
Alignment:
| Q |
117 |
tgctgcccttgtctctgacacctttt-acagaaattcataaattaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
212 |
Q |
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| T |
18409 |
tgctgcctttgtcactgacatctttttacaaaaattcacaaggaaatgtacaaagaaaaactaaatttcaaatgcatgttggtccattcacctttgg |
18505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42839838 - 42839790
Alignment:
| Q |
1 |
atgaaccaacacgatccaaga-agtactgaaggagaacaaacacagctt |
48 |
Q |
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| T |
42839838 |
atgaaccaacacgatccaagatagtgctgaaggagaacaaacacagctt |
42839790 |
T |
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