View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0951_high_16 (Length: 278)
Name: NF0951_high_16
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0951_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10254878 - 10255061
Alignment:
| Q |
1 |
ccaaacccacagttccttccacgtggaccctaccacctcttcgacggtgacggcatgcttcacgccattacaatctcaaacggaaaagctacactctgta |
100 |
Q |
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| T |
10254878 |
ccaaacccacagttccttccacgtggaccctaccacctcttcgacggtgatggcatgcttcacgccattacaatctcaaacggaaaagctacactctgta |
10254977 |
T |
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| Q |
101 |
gccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaact |
184 |
Q |
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| T |
10254978 |
gccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaact |
10255061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10230947 - 10230764
Alignment:
| Q |
1 |
ccaaacccacagttccttccacgtggaccctaccacctcttcgacggtgacggcatgcttcacgccattacaatctcaaacggaaaagctacactctgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||| |
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| T |
10230947 |
ccaaacccacagttccttccacgtggaccctaccatctctttgacggtgacggcatgcttcatgccattacaatctcaaacgggaaagccacactatgta |
10230848 |
T |
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| Q |
101 |
gccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaact |
184 |
Q |
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| T |
10230847 |
gccgttatgtaaaaacctacaagtacaaaattgaaaacaaagctggtcaccaacttatcccaaacgtgttttctggtttcaact |
10230764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10239727 - 10239544
Alignment:
| Q |
1 |
ccaaacccacagttccttccacgtggaccctaccacctcttcgacggtgacggcatgcttcacgccattacaatctcaaacggaaaagctacactctgta |
100 |
Q |
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|||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || ||| |||| ||||||||||||| ||||| |||| |
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| T |
10239727 |
ccaaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttcatgctgttaaaatcacaaacggaaaagccacactatgta |
10239628 |
T |
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| Q |
101 |
gccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaact |
184 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
10239627 |
gccgttacgttcaaacctataaatacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaact |
10239544 |
T |
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