View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0951_high_17 (Length: 261)
Name: NF0951_high_17
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0951_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 34249068 - 34248898
Alignment:
| Q |
1 |
agagttaaccctgcaggttgttgaaagagtaaaagaaacaaaatgtgaatgaaatgatgatgatgatg---------gaatataat---tccaacggctg |
88 |
Q |
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| T |
34249068 |
agagttaaccctgcaggttgttgaaagagtaaaagaaacaaaatgtgaatgaaatgatgatgatgatgatgatgagggaatataataattccaacggctg |
34248969 |
T |
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| Q |
89 |
cagcacctatgagtttgagttggtgatgatataataactggttttactttctccattgaaatagacctatg |
159 |
Q |
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| T |
34248968 |
cagcacctatgagtttgagttggtgatgatataataactggttttactttctccattgaaatagacctatg |
34248898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 34258189 - 34258038
Alignment:
| Q |
1 |
agagttaaccctgcaggttgttgaaagagtaaaagaaacaaaatgtgaatgaaatgatgatgatgatg---gaatataattccaacggctgcagcaccta |
97 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
34258189 |
agagttaaccctgtaggttgttgaaagagtaaaagaaacaaaatgggaatgaaatgatgatgatgatgagccaatataattccaatggttgcagcaccta |
34258090 |
T |
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| Q |
98 |
tgagtttgagttggtgatgatataataactggttttactttctccattgaaat |
150 |
Q |
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| T |
34258089 |
tgagtttgagttggtgataaaataataaat-gtttaacttcctccattgaaat |
34258038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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