View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0951_high_20 (Length: 250)
Name: NF0951_high_20
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0951_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 240
Target Start/End: Complemental strand, 35710052 - 35709839
Alignment:
| Q |
29 |
gtgaaataatgttccatctgttgttccttt------tcattcaagtgtttttaattatgtattttggcttattgttgtacgctgcgttgtcatttttgtt |
122 |
Q |
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| T |
35710052 |
gtgaaataatgttccatctgttgttcctttcaagcttaagtcaagtgtttttaattatgtattttggcttattgttgtacgctgcgttgtcatttttgtt |
35709953 |
T |
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| Q |
123 |
gtcgcaagcttagctgtctaatgatgtgggcaattcgaaccaagaccttattcaatcccaatgctgnnnnnnnnnnngttatatcatggtcaacagttct |
222 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35709952 |
gtcgcaaacttagctgtctaatgatatgggcaattcgaaccaagaccttattcaatcccaatgctg---tttttttcgttatatcatggtcaacagttct |
35709856 |
T |
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| Q |
223 |
atatattattatcctttg |
240 |
Q |
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|||||||| ||||||||| |
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| T |
35709855 |
atatatta-tatcctttg |
35709839 |
T |
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