View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0951_high_5 (Length: 402)
Name: NF0951_high_5
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0951_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 6394104 - 6394381
Alignment:
| Q |
1 |
catatcagtgtatagcaacacttatgtaatcactccattaaaatgtcaggtaccagttaaaatatagaataataggtataagagtagtccaagtagttag |
100 |
Q |
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| T |
6394104 |
catatcagtgtatagcaacacttatgtaatcactccattaaaatgtcaggtaccagttaaaatatagaataataggtataagagtagtccaagtagttag |
6394203 |
T |
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| Q |
101 |
gacttaggaggttgagctatgaattgagtagaaacttgaaggagagcttcactcttactatttattattttcttaattcaattggagaagcaattgtcca |
200 |
Q |
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| T |
6394204 |
gacttaggaggttgagctatgaattgagtagaaacttgaaggagagcttcactcttactatttcttattttcttaattcaattggagaagcaattgtcca |
6394303 |
T |
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| Q |
201 |
aggtcaaaacagaacactcagagcagacatgcagaagcaagtacgaaacacaggtacacatattatcaagttaaacat |
278 |
Q |
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| T |
6394304 |
aggtcaaaacagaacactcagagcagacatgcagaagcaagtacgaaacacaggtacacatattatcaagttaaacat |
6394381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 6425794 - 6425843
Alignment:
| Q |
169 |
tttcttaattcaattggagaagcaattgtccaaggtcaaaacagaacact |
218 |
Q |
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| T |
6425794 |
tttcttaattcaattggagaagcaattgtccaaggtcaaaacaaaacact |
6425843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8914150 - 8914105
Alignment:
| Q |
1 |
catatcagtgtatagcaacacttatgtaatcactccattaaaatgt |
46 |
Q |
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| T |
8914150 |
catatcagtgtatagcagctcgtatgtaatcactccattaaaatgt |
8914105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 14819886 - 14819943
Alignment:
| Q |
183 |
tggagaagcaattgtccaaggtcaaaacagaacactcagagcagacatgcagaagcaa |
240 |
Q |
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| T |
14819886 |
tggagaagcaataacctaaggtcaaaacagaacactcagggtagacatgcagacgcaa |
14819943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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