View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0951_low_11 (Length: 402)

Name: NF0951_low_11
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0951_low_11
NF0951_low_11
[»] chr1 (2 HSPs)
chr1 (123-390)||(31226561-31226828)
chr1 (123-340)||(31173676-31173875)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 123 - 390
Target Start/End: Original strand, 31226561 - 31226828
Alignment:
Q  123 ctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31226561 ctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgc 31226660  T
Q  223 cgccgcaactttctttgctgctggctttacagctgcaattttcttccccggagaagtccttgttgttgtctttgcaacctttgcattaggtttcgctttt 322  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31226661 cgccgcaactttctttgctgctggctttgcagctgcgactttcttccccggagaagtccttgctgttgtctttgcaacctttgcattaggtttcgctttt 31226760  T
Q  323 gcagcagttttggccttagaagcagcttttgacttggtagcagcgggcttgggctttgtggcaacagc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31226761 gcagcagttttggccttagaagcagcttttgacttggtagcagcgggcttgggctttgtggcagcagc 31226828  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 123 - 340
Target Start/End: Complemental strand, 31173875 - 31173676
Alignment:
Q  123 ctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgc 222  Q
    |||||||||||||||||||||| |  | ||| ||||| ||||||||| |||||||||||||||||||||| ||| ||||||| |||| ||||||||||||    
T  31173875 ctcatttccttccccctctcttgatcgcaactttcttagccggagacctaacagtcttagtcttaggcttcacgttcttcactggagttttcttctttgc 31173776  T
Q  223 cgccgcaactttctttgctgctggctttacagctgcaattttcttccccggagaagtccttgttgttgtctttgcaacctttgcattaggtttcgctttt 322  Q
                      |||||||||| ||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||     
T  31173775 ------------------tgctggctttgcagttgcaactttcttccctggagaagtccttgtcgttgtctttgcaacctttgcattaggcttcactttc 31173694  T

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