View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0951_low_15 (Length: 386)

Name: NF0951_low_15
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0951_low_15
NF0951_low_15
[»] chr6 (9 HSPs)
chr6 (11-358)||(2602135-2602482)
chr6 (237-350)||(33234849-33234962)
chr6 (238-336)||(12843971-12844069)
chr6 (9-80)||(19294667-19294738)
chr6 (43-284)||(17261714-17261962)
chr6 (238-336)||(14494435-14494533)
chr6 (238-336)||(17540085-17540183)
chr6 (239-318)||(57082-57162)
chr6 (42-137)||(33234694-33234790)
[»] chr2 (6 HSPs)
chr2 (40-350)||(17651313-17651628)
chr2 (158-325)||(18724652-18724819)
chr2 (242-352)||(44649966-44650077)
chr2 (9-80)||(26576401-26576472)
chr2 (238-347)||(34409577-34409687)
chr2 (70-286)||(41849126-41849347)
[»] chr1 (7 HSPs)
chr1 (42-350)||(16426486-16426802)
chr1 (218-350)||(3387709-3387843)
chr1 (218-350)||(50127135-50127268)
chr1 (238-344)||(3955010-3955116)
chr1 (238-347)||(48632578-48632688)
chr1 (238-333)||(126323-126419)
chr1 (9-85)||(48632329-48632405)
[»] chr8 (15 HSPs)
chr8 (218-350)||(18393525-18393659)
chr8 (9-323)||(13097519-13097841)
chr8 (272-358)||(2796240-2796326)
chr8 (272-358)||(2875409-2875495)
chr8 (272-358)||(2889764-2889850)
chr8 (272-358)||(3145285-3145371)
chr8 (236-358)||(27401869-27401991)
chr8 (272-358)||(3159877-3159963)
chr8 (218-358)||(1226102-1226245)
chr8 (9-137)||(2874854-2874983)
chr8 (240-345)||(15131966-15132071)
chr8 (240-287)||(31772559-31772606)
chr8 (238-365)||(44502330-44502457)
chr8 (69-137)||(2797251-2797320)
chr8 (238-286)||(8690159-8690207)
[»] scaffold0012 (1 HSPs)
scaffold0012 (218-350)||(209243-209377)
[»] scaffold1723 (1 HSPs)
scaffold1723 (170-350)||(265-445)
[»] chr3 (3 HSPs)
chr3 (204-309)||(42718559-42718665)
chr3 (9-85)||(25092132-25092208)
chr3 (239-347)||(29697008-29697116)
[»] chr7 (14 HSPs)
chr7 (158-335)||(9729790-9729969)
chr7 (194-346)||(11820479-11820633)
chr7 (238-347)||(37338759-37338868)
chr7 (218-350)||(27993956-27994093)
chr7 (219-352)||(48598361-48598495)
chr7 (257-347)||(32716528-32716618)
chr7 (268-352)||(11809304-11809388)
chr7 (9-80)||(44572283-44572354)
chr7 (205-348)||(11810876-11811021)
chr7 (270-346)||(6439797-6439873)
chr7 (32-126)||(11809061-11809156)
chr7 (238-347)||(27616382-27616492)
chr7 (194-287)||(11815469-11815563)
chr7 (297-340)||(25445505-25445549)
[»] chr4 (3 HSPs)
chr4 (209-334)||(32593896-32594018)
chr4 (238-332)||(45612436-45612530)
chr4 (15-80)||(54305958-54306023)
[»] chr5 (3 HSPs)
chr5 (238-332)||(40837975-40838068)
chr5 (242-347)||(38989252-38989355)
chr5 (238-322)||(32676631-32676716)


Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 2602482 - 2602135
Alignment:
Q  11 cacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgccaaaatgagttgttttctact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602482 cacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgccaaaatgagttgttttctact 2602383  T
Q  111 ttattttgacactccttggaccggtgtttgacacctataatacatataggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccac 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602382 ttattttgacactccttggaccggtgtttgacacctataacacatataggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccac 2602283  T
Q  211 acacaacagattcaagagttaaatctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602282 acacaacagattcaagagttaaatctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtac 2602183  T
Q  311 atggataaataaagggcaaatactattgtatcttgttatatacctttt 358  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2602182 atggataaataaagggtaaatactattgtatcttgttatatacctttt 2602135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 33234849 - 33234962
Alignment:
Q  237 gtgagaaatgtt--gatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatact 334  Q
    ||||||||||||  ||||||  |||| ||||| |||||||||||||||||||||  ||| || |||||||||||| |||||||||| |||| ||||||||    
T  33234849 gtgagaaatgttttgatcaagaaggggttatagacattaaagttgattacaaca-ttttgaaattttcgatagtagatggataaat-aaggtcaaatact 33234946  T
Q  335 attgtatcttgttata 350  Q
    ||||||||||||||||    
T  33234947 attgtatcttgttata 33234962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 12844069 - 12843971
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||||||||||| ||||| ||||| |||||| ||||||||| | ||  ||||  ||||| ||||||| ||| ||||||||||| ||||||||||    
T  12844069 tgagaaatgttgatcaattaggggttatacacattatagttgattatatcatttttagcttttttgatagtagatgaataaataaaggtcaaatactat 12843971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 19294738 - 19294667
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcg 80  Q
    ||||| ||||||| |||||||| ||||||||| |||||||||||| || |||||| | ||||||||||||||    
T  19294738 agcaccgacacctctaggattaggcgtgtcgcggtgtccgacactcctgtgacacccgtacgacacgtgtcg 19294667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 284
Target Start/End: Complemental strand, 17261962 - 17261714
Alignment:
Q  43 tgtccgacactgctatgacacacatacgacacgtgtcggacaag-tgccaaaatgagttgttttctactttattttgacactccttggaccggtgtttga 141  Q
    ||||| ||||| ||| ||||| | ||||||||||||| |||||| | || |||| || |||||||| |||||||| |||||| ||| |||||||||  ||    
T  17261962 tgtccaacactcctacgacactcgtacgacacgtgtccgacaagattcctaaataaggtgttttcttctttatttcgacacttcttagaccggtgtccga 17261863  T
Q  142 cacct--ataatacatat---aggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaa--at 234  Q
    |||||   ||| || |||   | | ||||||| ||| ||||| | || | | || | ||||||| | ||||||||||||  ||||| |||||||||  ||    
T  17261862 cacctgcttaacacttatatgaagtgtgtcggacaattcaaacatatgt-atgaatttttttctctgcttccacacacattagatttaagagttaaagat 17261764  T
Q  235 ctgtgagaaatgttgatcaactagggtttataaacattaaagttgattac 284  Q
     |||||||||||||||||||  |||| ||||  |||||||||||||||||    
T  17261763 gtgtgagaaatgttgatcaatgaggggttatgtacattaaagttgattac 17261714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 14494435 - 14494533
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||||||||||| ||||| ||||| |||| | ||||||||| | ||  ||||| ||||| |||| || | | ||||||||||| ||||||||||    
T  14494435 tgagaaatgttgatcaattaggggttatagacatcatagttgattatatcatttttaacttttttgataatagacgaataaataaaggtcaaatactat 14494533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 17540183 - 17540085
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||||||||||| ||||| |||||||  ||| ||||||||| | ||  ||||  ||||| ||||||| ||  ||||||||||| ||||||||||    
T  17540183 tgagaaatgttgatcaattaggggttataaaagttatagttgattatatcatttttagcttttttgatagtagataaataaataaaggtcaaatactat 17540085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 57162 - 57082
Alignment:
Q  239 gagaaatgttgatcaactag-ggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataa 318  Q
    |||||||||||||||||||| || ||||| |||||||||||||||| ||||  ||||  ||||| ||||||| ||| ||||    
T  57162 gagaaatgttgatcaactagagggttatagacattaaagttgattataacatttttaccttttttgatagtagatgaataa 57082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 33234694 - 33234790
Alignment:
Q  42 gtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgcca-aaatgagttgttttctactttattttgacactccttggaccggtgt 137  Q
    ||||| |||||  ||| ||||| | |||||||||||| ||||||||| || |||| ||||||||||  ||||| || || |||| ||||||||||||    
T  33234694 gtgtcggacacatctaagacactcgtacgacacgtgttggacaagtgtcataaataagttgttttcatctttacttcgatactctttggaccggtgt 33234790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 40 - 350
Target Start/End: Complemental strand, 17651628 - 17651313
Alignment:
Q  40 cagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtg-ccaaaatgagttgttttctactttattttgacactccttggaccggtgtt 138  Q
    ||||||||||||||  ||||||||   ||| |||| ||||| ||||||| || |||| ||||||||||| ||||| || |||||||||| |||||||||     
T  17651628 cagtgtccgacactcttatgacacttgtacaacac-tgtcgaacaagtgtcctaaat-agttgttttcttctttacttcgacactcctttgaccggtgtc 17651531  T
Q  139 tgacacctataataca----tat-aggcgtgtcgggcaactcaaataaatatcaggatt-atttttctttacttccacacacaacagattcaagagttaa 232  Q
     ||||| ||||  |||    ||| ||||||||||| ||||| | | |||||||  |||| ||||||||   ||| ||||||||| |||||||||||||||    
T  17651530 cgacacttatataacacttatatgaggcgtgtcggacaacttagacaaatatctagatttatttttctg--ctttcacacacaatagattcaagagttaa 17651433  T
Q  233 a--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaa 330  Q
    |  | ||||| |||||||||||||| || | ||||| ||||||||||||||||||||  |||||| |||||| |||||| ||||||||||||||| ||||    
T  17651432 aggtgtgtgaaaaatgttgatcaacgagaggttatagacattaaagttgattacaacgtatttaagtttttcaatagtagatggataaataaaggccaaa 17651333  T
Q  331 tactattgtatcttgttata 350  Q
    || ||||||| |||||||||    
T  17651332 tattattgtaacttgttata 17651313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 325
Target Start/End: Original strand, 18724652 - 18724819
Alignment:
Q  158 aggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaac 255  Q
    ||||||||| | ||||||| | ||||||| | |||  |||||| ||||||| |||| |  ||||||||||||||||  | ||||||||||| ||||||||    
T  18724652 aggcgtgtcagacaactcagacaaatatctgaatt--ttttctctacttccgcacatagtagattcaagagttaaagatgtgtgagaaatgctgatcaac 18724749  T
Q  256 tagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagg 325  Q
     |||  ||||| |||| ||||||||| ||| | |||||||||||| | |||||| ||||||||| |||||    
T  18724750 gaggaattatagacatcaaagttgatgacagcgcatttaaattttccaatagtagatggataaagaaagg 18724819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 352
Target Start/End: Original strand, 44649966 - 44650077
Alignment:
Q  242 aaatgttgatcaactagggt-ttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgta 340  Q
    ||||||||||||| |||||  ||||| | |||||||||||||||||||  ||||| ||||| ||||||| ||| ||||||||||| ||||| |||| |||    
T  44649966 aaatgttgatcaattaggggcttatagaaattaaagttgattacaacatttttaacttttttgatagtagatgaataaataaaggtcaaattctatggta 44650065  T
Q  341 tcttgttatata 352  Q
    ||||||| ||||    
T  44650066 tcttgttttata 44650077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 26576472 - 26576401
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcg 80  Q
    ||||| ||||||| ||||| ||  |||||||| |||||||||||| ||||||||| | ||||||||||||||    
T  26576472 agcacggacacctctaggactagacgtgtcgcggtgtccgacactcctatgacacccgtacgacacgtgtcg 26576401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 347
Target Start/End: Original strand, 34409577 - 34409687
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttc-gatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||||||||||| ||||| ||||| |||||| ||||||||| | ||  ||||  |||||| ||  ||| ||  ||||||||||| ||||||||||    
T  34409577 tgagaaatgttgatcaattaggggttatagacattatagttgattatatcatttttagctttttctgacggtagataaataaataaaggtcaaatactat 34409676  T
Q  337 tgtatcttgtt 347  Q
      |||||||||    
T  34409677 aatatcttgtt 34409687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 286
Target Start/End: Complemental strand, 41849347 - 41849126
Alignment:
Q  70 gacacgtgtcggacaagtg-ccaaaatgagttgttttctactttattttgacactccttggaccggtgtttgacacc--tataatacatat---aggcgt 163  Q
    ||||||| ||| ||||||| || |||| |||| ||||||  ||||||| |||||||||||||| |||||  ||||||  ||||| || |||   ||||||    
T  41849347 gacacgtatcgaacaagtgtcctaaataagttattttcttttttatttcgacactccttggactggtgtccgacacctatataacacttatatgaggcgt 41849248  T
Q  164 gtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaa--atctgtgagaaatgttgatcaactagggt 261  Q
    ||||| ||||||||| |||| || | ||| ||||||| | ||||  |||| |  |||||||||| ||||  || ||||||||| ||||| |||| |||      
T  41849247 gtcggacaactcaaacaaatgtctgaatt-tttttctctgcttc--cacatagtagattcaagaattaaagatgtgtgagaaaagttgagcaacgaggca 41849151  T
Q  262 ttataaacattaaagttgattacaa 286  Q
    || |  |||||||||||||||||||    
T  41849150 ttctggacattaaagttgattacaa 41849126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 350
Target Start/End: Complemental strand, 16426802 - 16426486
Alignment:
Q  42 gtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgcca-aaatgagttgttttctactttattttgacactccttggaccggtgtttg 140  Q
    |||||||||||| |||||| || | ||||||| |||||| ||||||| || |||| |||| |||| | ||||| |||||||||| |||||||| |||| |    
T  16426802 gtgtccgacactcctatga-actcgtacgacatgtgtcgaacaagtgtcataaataagttttttttttctttactttgacactctttggaccg-tgttcg 16426705  T
Q  141 acacct---ataatacatata---ggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagag-ttaaa 233  Q
    ||||||   |||| || ||||   ||||||| || ||||||||| ||||||  ||||| ||||||||| |||| ||||| |  ||||||||| | |||||    
T  16426704 acaccttatataacacttatatgaggcgtgttggacaactcaaacaaatatacggattttttttctttgcttctacacatagtagattcaaggggttaaa 16426605  T
Q  234 --tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaat 331  Q
      | |||||||||||||||||||| |||  ||||| ||||||||||||||||||   |||||||||||||| ||| || || |||||||||||| |||||    
T  16426604 gatgtgtgagaaatgttgatcaacgaggagttatagacattaaagttgattacagtgcatttaaatttttcaataatagatagataaataaaggccaaat 16426505  T
Q  332 actattgtatcttgttata 350  Q
    |||||||||  ||||||||    
T  16426504 actattgtaatttgttata 16426486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 350
Target Start/End: Complemental strand, 3387843 - 3387709
Alignment:
Q  218 agattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 315  Q
    ||||||||||||||||  | |||||||||||||||||||  | || ||||| ||||||||||||||||||||   ||||||||||||||| ||| ||| |    
T  3387843 agattcaagagttaaagatgtgtgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaatttttcgatggtagatgaa 3387744  T
Q  316 taaataaagggcaaatactattgtatcttgttata 350  Q
    |||||||||| ||||||||||| ||||||||||||    
T  3387743 taaataaaggtcaaatactattttatcttgttata 3387709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 350
Target Start/End: Original strand, 50127135 - 50127268
Alignment:
Q  218 agattcaagagttaaatctgt--gagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 315  Q
    ||||||||||||||||  |||  ||||||| ||||| ||| |||| ||||| ||||||||||||| | || | ||||||||||||||||||||| || ||    
T  50127135 agattcaagagttaaagatgtatgagaaatattgattaacgaggggttatagacattaaagttgaatgcagcgcatttaaatttttcgatagtagat-ga 50127233  T
Q  316 taaataaagggcaaatactattgtatcttgttata 350  Q
     ||||||||| ||||||||||||||||||||||||    
T  50127234 aaaataaaggccaaatactattgtatcttgttata 50127268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 344
Target Start/End: Complemental strand, 3955116 - 3955010
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    |||||||||||||||||| |||| ||| | | ||||||||||||||||||   ||||  ||||||||||||| ||||||||||||||| ||||||| ||     
T  3955116 tgagaaatgttgatcaacaaggggttacagagattaaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgatc 3955017  T
Q  338 gtatctt 344  Q
    |||||||    
T  3955016 gtatctt 3955010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 347
Target Start/End: Original strand, 48632578 - 48632688
Alignment:
Q  238 tgagaaatgttgatcaacta-gggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||||||||||| || ||| ||||| | ||||||||||||||||||   ||||  ||||| ||||||| | | ||||||||||| ||||||||||    
T  48632578 tgagaaatgttgatcaattacggggttatagaaattaaagttgattacaacgtttttagcttttttgatagtagaagaataaataaaggtcaaatactat 48632677  T
Q  337 tgtatcttgtt 347  Q
     ||||||||||    
T  48632678 ggtatcttgtt 48632688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 126419 - 126323
Alignment:
Q  238 tgagaaatgttgatcaactagggt--ttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatac 333  Q
    ||||||||||||||||| |||||   ||||| |||||||||||||||| ||||  ||||| |||||  |||||| ||| ||||||||||| |||||||    
T  126419 tgagaaatgttgatcaattaggggggttatagacattaaagttgattataacatttttaacttttt-aatagtagatgaataaataaaggtcaaatac 126323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 48632329 - 48632405
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaa 85  Q
    ||||| ||||||| ||||| || ||||||||| |||||||||||| | ||||||| | || |||||| |||||||||    
T  48632329 agcacggacacctctaggactaggcgtgtcgcggtgtccgacactcccatgacactcgtatgacacgcgtcggacaa 48632405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 350
Target Start/End: Original strand, 18393525 - 18393659
Alignment:
Q  218 agattcaagagttaaatctgtg--agaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 315  Q
    ||||||||||||||||  ||||  |||||||||||||||  | || ||||| ||||||||||||||||||||   ||||||||||| ||||||| |||||    
T  18393525 agattcaagagttaaagatgtgcgagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgtttttaaattttttgatagtagatgga 18393624  T
Q  316 taaataaagggcaaatactattgtatcttgttata 350  Q
    |||||||||| ||||||||||| ||||||||||||    
T  18393625 taaataaaggtcaaatactattttatcttgttata 18393659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 13097841 - 13097519
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtg-ccaaaatgagttgttttct 107  Q
    ||||||||||| | ||| |||| ||||||||| ||||||||||||  |||||||| | ||||||||| |||||| ||||  || |||| || | ||||||    
T  13097841 agcacagacac-tctagaattaggcgtgtcgcggtgtccgacactcatatgacactcgtacgacacgagtcggataagtatcctaaataagatattttct 13097743  T
Q  108 actttattttgacactccttggaccggtgtttgacacctataataca----tat-aggcgtgtcgggcaactcaaataaatatcaggattatttt-tctt 201  Q
     ||||| | ||||||||||| |||||||||  ||||||||||  |||    ||| | ||||||||| ||| ||||| |||| |  |  || |||| |||     
T  13097742 tctttactgtgacactccttagaccggtgtgcgacacctatataacacttatatgaagcgtgtcggacaattcaaacaaatgtttgattttttttgtctc 13097643  T
Q  202 tacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaattt 299  Q
    | ||||||||||||  ||||||||||||||||  | |||||||||||||||||||| || | ||||  |||||||||||||||| ||||  ||| |||||    
T  13097642 tgcttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacaagaggttatggacattaaagttgattaaaacattttttaattt 13097543  T
Q  300 ttcgatagtacatggataaataaa 323  Q
    ||| |||||| ||| |||||||||    
T  13097542 ttcaatagtagatgaataaataaa 13097519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 2796326 - 2796240
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttt 358  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  2796326 taaagttgattacaacgtatttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagacctttt 2796240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 2875409 - 2875495
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttt 358  Q
    ||||||||||||||||   |||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  2875409 taaagttgattacaacgtgtttaaatttttcaatagtagatggataaataaaggccaaatactattgtatcttgttataaacctttt 2875495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 2889764 - 2889850
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttt 358  Q
    ||||||||| ||||||   ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  2889764 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttatagacctttt 2889850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 3145371 - 3145285
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttt 358  Q
    ||||||||| ||||||   ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  3145371 taaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttatagacctttt 3145285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 236 - 358
Target Start/End: Complemental strand, 27401991 - 27401869
Alignment:
Q  236 tgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatacta 335  Q
    ||||| |||||||||||||| |||| ||||| ||||||||||||||||||||   |||   | |||| |||||| ||||||||||||||| ||||| |||    
T  27401991 tgtgaaaaatgttgatcaacgaggggttatagacattaaagttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattcta 27401892  T
Q  336 ttgtatcttgttatatacctttt 358  Q
    ||||||||||||||||| |||||    
T  27401891 ttgtatcttgttatataactttt 27401869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 3159963 - 3159877
Alignment:
Q  272 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatatacctttt 358  Q
    ||||||||||||||||   |||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  3159963 taaagttgattacaacgtgtttaaatttttcgatattagatggataaataaaggccaaatactattgtaacttgttatagacctttt 3159877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 218 - 358
Target Start/End: Complemental strand, 1226245 - 1226102
Alignment:
Q  218 agattcaagagttaaatctgtg---agaaatgttgatcaactag-ggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatg 313  Q
    |||| |||||||||||| ||||   ||||||||| ||||| ||| |||||||| | |||||||||||||||||||  ||||||||||| ||||||| |||    
T  1226245 agatacaagagttaaatatgtgttgagaaatgttaatcaattagaggtttatagaaattaaagttgattacaacatttttaaattttt-gatagtagatg 1226147  T
Q  314 gataaataaagggcaaatactattgtatcttgttatatacctttt 358  Q
     ||||||||||  |||||||| | |||||||||| |||| |||||    
T  1226146 aataaataaagatcaaatactctggtatcttgttttataactttt 1226102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 2874854 - 2874983
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgc-caaaatgagttgttttct 107  Q
    ||||| ||||||| |||||||| || |||||| || ||||||||  ||||||||| ||||| ||||||||| ||||||||  | |||| | | |||||||    
T  2874854 agcacggacacctctaggattacgcatgtcgcggtctccgacacgcctatgacactcatacaacacgtgtcagacaagtgtactaaataaatggttttct 2874953  T
Q  108 actttattttgacactccttggaccggtgt 137  Q
     ||||||||||||||||||||||| |||||    
T  2874954 tctttattttgacactccttggactggtgt 2874983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 345
Target Start/End: Original strand, 15131966 - 15132071
Alignment:
Q  240 agaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgt 339  Q
    |||||| |||||||| ||||| ||||| |||||| ||||||||| | ||  ||||  ||||||||||||| ||  ||||||||||  ||||||||||  |    
T  15131966 agaaatattgatcaattaggggttatagacattatagttgattatatcatttttagctttttcgatagtagataaataaataaagatcaaatactatgat 15132065  T
Q  340 atcttg 345  Q
    ||||||    
T  15132066 atcttg 15132071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 31772606 - 31772559
Alignment:
Q  240 agaaatgttgatcaactagggtttataaacattaaagttgattacaac 287  Q
    |||||||||||||||| |||| |||  |||||||||||||||||||||    
T  31772606 agaaatgttgatcaacaaggggttaccaacattaaagttgattacaac 31772559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 365
Target Start/End: Complemental strand, 44502457 - 44502330
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    ||||||||||||||  | ||||| ||||| |||||| ||||||||| |  |  ||||| ||||| ||||| | ||| ||||||||||| |||||| |||     
T  44502457 tgagaaatgttgattgattaggggttatagacattatagttgattatattatttttaacttttttgatagcagatgaataaataaaggtcaaatagtatg 44502358  T
Q  338 gtatcttgttatataccttttgatgatg 365  Q
     ||||||||| || | ||||| ||||||    
T  44502357 atatcttgttgtagaactttttatgatg 44502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 2797320 - 2797251
Alignment:
Q  69 cgacacgtgtcggacaagtgc-caaaatgagttgttttctactttattttgacactccttggaccggtgt 137  Q
    ||||||||||| ||||||||  | |||| | | ||||||| ||||||||||||||||||||||| |||||    
T  2797320 cgacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgt 2797251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 8690207 - 8690159
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaa 286  Q
    |||||||||||||||||  |  | |||||||||||||||||||||||||    
T  8690207 tgagaaatgttgatcaataatagattataaacattaaagttgattacaa 8690159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 218 - 350
Target Start/End: Complemental strand, 209377 - 209243
Alignment:
Q  218 agattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatgga 315  Q
    ||||||||||||||||  | |||||||||||||||||||| |||| ||||  ||||||||||| ||||||||   ||||||||||||||| ||| |||||    
T  209377 agattcaagagttaaagatttgtgagaaatgttgatcaacgaggggttatcgacattaaagtttattacaacgtttttaaatttttcgattgtagatgga 209278  T
Q  316 taaataaagggcaaatactattgtatcttgttata 350  Q
    |||||||||| |||||| | |||||| ||||||||    
T  209277 taaataaaggccaaatattgttgtattttgttata 209243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 350
Target Start/End: Original strand, 265 - 445
Alignment:
Q  170 caactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataa 267  Q
    ||||||| | ||||||| ||||| ||||| | | |||| |||||||  ||||||||| ||||||  | |||||||||||||||||||| | || ||||      
T  265 caactcagacaaatatctggatttttttt-tctgcttctacacacagtagattcaagggttaaagatgtgtgagaaatgttgatcaacaatgggttatgg 363  T
Q  268 acattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttata 350  Q
    |||| |||||||||| ||||  |||| |||||| |||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  364 acatcaaagttgattccaacgtatttcaatttt-cgatagcagatggataaataaaggtcaaatactattgtatcttgttata 445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 204 - 309
Target Start/End: Original strand, 42718559 - 42718665
Alignment:
Q  204 cttccacacacaacagattcaagagttaaatc-tgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttc 302  Q
    ||||||||||||| ||||| |||||||||| | ||||||||||||||| |||| |||| ||||||||||||||||||||| |||| |||||||| |||||    
T  42718559 cttccacacacaatagatttaagagttaaaacgtgtgagaaatgttgaacaacgagggattataaacattaaagttgattccaacgcatttaaaattttc 42718658  T
Q  303 gatagta 309  Q
     ||||||    
T  42718659 aatagta 42718665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 25092132 - 25092208
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaa 85  Q
    ||||| ||||||| ||||| || | ||||||||||||| |||||| ||||||||| | ||| |||||||||||||||    
T  25092132 agcacggacacctctaggactaggtgtgtcgcagtgtctgacacttctatgacactcgtacaacacgtgtcggacaa 25092208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 29697116 - 29697008
Alignment:
Q  239 gagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattg 338  Q
    ||||||||||| ||||  |||| ||||| |||||||| ||||||  ||||  ||||  |||| |||||| | ||| ||||||||||  |||||| |||||    
T  29697116 gagaaatgttgttcaaggaggggttatagacattaaaattgattctaacatttttagcttttacgatagcagatgtataaataaagctcaaataatattg 29697017  T
Q  339 tatcttgtt 347  Q
    |||||||||    
T  29697016 tatcttgtt 29697008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 335
Target Start/End: Original strand, 9729790 - 9729969
Alignment:
Q  158 aggcgtgtcgggcaactcaaataaatatcaggattatttttctttacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaac 255  Q
    ||||||||||| ||||||||| |||||||  ||||  |||| | | ||| |||||  |   |||||||||||||||  | ||||||||||||||||||||    
T  9729790 aggcgtgtcggacaactcaaacaaatatctagatttattttttctgctttcacacggagtggattcaagagttaaagatgtgtgagaaatgttgatcaac 9729889  T
Q  256 tagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatacta 335  Q
     |  | || |  |||||||||||||||||||| |||||||||||||||||||||  |||||||||||||  |||||||||    
T  9729890 gaaaggttttttacattaaagttgattacaacgcatttaaatttttcgatagtaggtggataaataaagtccaaatacta 9729969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 11820479 - 11820633
Alignment:
Q  194 tttttctttacttccacacacaacagattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacat 291  Q
    ||||||| | ||||||||||||  ||||||||||||||||  | |||||||||||||||||||| | || ||||| ||||||||| |||||||||||  |    
T  11820479 tttttctctgcttccacacacagtagattcaagagttaaagatgtgtgagaaatgttgatcaacgaagggttatagacattaaagatgattacaacattt 11820578  T
Q  292 ttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgt 346  Q
    ||||| ||||  |||||| ||  ||||||||||  ||||| ||||||||| ||||    
T  11820579 ttaaaatttttaatagtagataaataaataaagctcaaatgctattgtatgttgt 11820633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 347
Target Start/End: Original strand, 37338759 - 37338868
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactatt 337  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| | ||||  ||||| ||||| ||||||| ||| ||||||||||| ||||||||||     
T  37338759 tgagaaatgttgatcaattagggattttaaacattaaagttgataataacatttttaacttttttgatagtagatgaataaataaaggtcaaatactatg 37338858  T
Q  338 gtatcttgtt 347  Q
     |||||||||    
T  37338859 atatcttgtt 37338868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 350
Target Start/End: Complemental strand, 27994093 - 27993956
Alignment:
Q  218 agattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaa---cacatttaaatttttcgatagtacat 312  Q
    ||||||||||||||||  | |||||||||| || |||||  |||||||||| ||||||||||| |||||||   ||  ||||||||||||||| ||| ||    
T  27994093 agattcaagagttaaagatgtgtgagaaatatttatcaaggagggtttatagacattaaagtttattacaaatgcatttttaaatttttcgatggtagat 27993994  T
Q  313 ggataaataaagggcaaatactattgtatcttgttata 350  Q
    ||||||||||||  ||| | ||||||||||||||||||    
T  27993993 ggataaataaagatcaattgctattgtatcttgttata 27993956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 352
Target Start/End: Complemental strand, 48598495 - 48598361
Alignment:
Q  219 gattcaagagttaaa--tctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtaca-tgga 315  Q
    |||||||||||||||  | |||||||||||||||||||  |||||  ||| | |||||||||| |||||||   ||| ||||||| |||| || | ||||    
T  48598495 gattcaagagttaaagatgtgtgagaaatgttgatcaatgagggtc-atagatattaaagttggttacaacgttttttaattttttgata-tatagtgga 48598398  T
Q  316 taaataaagggcaaatactattgtatcttgttatata 352  Q
    |||||||||| |||||||||||||||| |||||||||    
T  48598397 taaataaaggtcaaatactattgtatcgtgttatata 48598361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 347
Target Start/End: Original strand, 32716528 - 32716618
Alignment:
Q  257 agggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgtt 347  Q
    |||| ||||| |||||||| |||||| || ||  ||||| ||||||||||||  ||| ||||||||||  |||||||||||||||||||||    
T  32716528 agggattatagacattaaaattgattgcaccatttttaactttttcgatagtggatgaataaataaagatcaaatactattgtatcttgtt 32716618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 11809304 - 11809388
Alignment:
Q  268 acattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgttatata 352  Q
    |||||||| |||||||||||   ||||||||||| ||  ||| ||| |  |||||||| ||||||||||||||||||||||||||    
T  11809304 acattaaatttgattacaacctttttaaattttttgacggtagatgaagtaataaaggccaaatactattgtatcttgttatata 11809388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 44572283 - 44572354
Alignment:
Q  9 agcacagacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcg 80  Q
    ||||| ||||||| || || || ||||||||| |||||||||||| ||||||||| | ||||||||||||||    
T  44572283 agcacggacacctctacgactaggcgtgtcgcggtgtccgacactcctatgacactcgtacgacacgtgtcg 44572354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 348
Target Start/End: Original strand, 11810876 - 11811021
Alignment:
Q  205 ttccacacacaacagattcaagagttaaatc--tgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttc 302  Q
    ||||||||| |  |||||||||||||||| |  |||||||||||||||||| | |||||||||| |||| |||  |||| ||  |   ||||||||||      
T  11810876 ttccacacaaagtagattcaagagttaaagccttgtgagaaatgttgatcagcgagggtttatagacataaaaaatgataacggcgtttttaaattttat 11810975  T
Q  303 gatagtacatggataaataaagggcaaatactattgtatcttgtta 348  Q
    || |||| ||  || |||||||| |||||| |||||||||||||||    
T  11810976 gacagtagataaattaataaaggtcaaatattattgtatcttgtta 11811021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 346
Target Start/End: Complemental strand, 6439873 - 6439797
Alignment:
Q  270 attaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtatcttgt 346  Q
    |||||||||||||||||||  ||||  |||||||||||||  || ||||||| | | |||||||||| |||||||||    
T  6439873 attaaagttgattacaacatttttatctttttcgatagtagttgaataaatagatgtcaaatactatcgtatcttgt 6439797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 11809061 - 11809156
Alignment:
Q  32 gcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcggacaagtgcca-aaatgagttgttttctactttattttgacactcct 126  Q
    ||||||||| ||||| ||||||   || |||||||||||||| |||||||||||||| || |||  |||| |||||| ||||| ||||||| ||||    
T  11809061 gcgtgtcgcggtgtctgacactataataacacacatacgacatgtgtcggacaagtgtcataaacaagttattttcttctttactttgacattcct 11809156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 347
Target Start/End: Complemental strand, 27616492 - 27616382
Alignment:
Q  238 tgagaaatgttgatcaactagggt-ttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactat 336  Q
    ||||||||| || |||| |||||  ||||| |||||||||||||||| ||||  ||||  ||||  ||||||| ||| ||||||||| | ||||||||||    
T  27616492 tgagaaatgatggtcaattagggggttatagacattaaagttgattataacatttttagcttttctgatagtagatgtataaataaaagtcaaatactat 27616393  T
Q  337 tgtatcttgtt 347  Q
      |||||||||    
T  27616392 gatatcttgtt 27616382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 11815469 - 11815563
Alignment:
Q  194 tttttctttacttccacacacaacagattcaagagtt--aaatctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaac 287  Q
    ||||||| |||||| |||| ||  |||||||||||||  | || | |||||||||||||||||| || | ||||| | ||||||||||||||||||    
T  11815469 tttttctctacttctacacgcagtagattcaagagttagagatgtttgagaaatgttgatcaacgagag-ttatagatattaaagttgattacaac 11815563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 25445549 - 25445505
Alignment:
Q  297 tttttcgatagtacatggataaat-aaagggcaaatactattgta 340  Q
    ||||||||||||| |||||||||| ||||| ||||||||||||||    
T  25445549 tttttcgatagtagatggataaataaaaggccaaatactattgta 25445505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 32594018 - 32593896
Alignment:
Q  209 acacacaacagattcaagagttaaatctgtgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagt 308  Q
    |||||||  ||||||||||||||||  |||||||||||||||||||  |||  |  ||||||||||| ||||||||||||||||||||||||| || |||    
T  32594018 acacacagtagattcaagagttaaagatgtgagaaatgttgatcaatgaggagt--taaacattaaa-ttgattacaacacatttaaattttttgagagt 32593922  T
Q  309 acatggataaataaagggcaaatact 334  Q
    | |||||||||||||||  |||||||    
T  32593921 agatggataaataaaggctaaatact 32593896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 332
Target Start/End: Original strand, 45612436 - 45612530
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaata 332  Q
    |||||||||||||| ||  |||||||||| |||||| ||||||||| | ||  ||||  ||||| ||||||| ||| ||||||||||| ||||||    
T  45612436 tgagaaatgttgattaataagggtttatagacattatagttgattatatcatttttagcttttttgatagtagatgaataaataaaggtcaaata 45612530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 54306023 - 54305958
Alignment:
Q  15 gacacctttaggattaagcgtgtcgcagtgtccgacactgctatgacacacatacgacacgtgtcg 80  Q
    ||||||| ||||| || ||||||| | |||||||||||| ||||||||| | ||||||||||||||    
T  54306023 gacacctctaggactaggcgtgtcacggtgtccgacactcctatgacacccgtacgacacgtgtcg 54305958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 40838068 - 40837975
Alignment:
Q  238 tgagaaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaata 332  Q
    ||||||||||||||||| ||||| | |||||||||| |||| |||| ||||  ||||  ||||| ||||||| ||| ||||||||||| ||||||    
T  40838068 tgagaaatgttgatcaattaggggtaataaacattatagtttattataacatttttagcttttt-gatagtagatgaataaataaaggtcaaata 40837975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 347
Target Start/End: Original strand, 38989252 - 38989355
Alignment:
Q  242 aaatgttgatcaactagggtttataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggcaaatactattgtat 341  Q
    ||||||||||||| ||||| ||||| |||||  | ||||||| | ||  ||||||| ||| ||||||| ||| ||||||||| | ||||||||||  |||    
T  38989252 aaatgttgatcaattaggggttatagacatt--atttgattatatcatttttaaatcttttgatagtagatgaataaataaaagtcaaatactatgatat 38989349  T
Q  342 cttgtt 347  Q
    ||||||    
T  38989350 cttgtt 38989355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 32676631 - 32676716
Alignment:
Q  238 tgagaaatgttgatcaactagggtt-tataaacattaaagttgattacaacacatttaaatttttcgatagtacatggataaataa 322  Q
    |||||||||||| |||| |||||   |||| |||||||||||||||| ||||  ||||| ||||| ||||||| ||| ||||||||    
T  32676631 tgagaaatgttgttcaattagggggatatagacattaaagttgattataacatttttaacttttttgatagtagatgaataaataa 32676716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University