View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0951_low_21 (Length: 338)

Name: NF0951_low_21
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0951_low_21
NF0951_low_21
[»] chr3 (1 HSPs)
chr3 (172-333)||(24226678-24226839)
[»] chr6 (12 HSPs)
chr6 (172-333)||(30149385-30149546)
chr6 (172-333)||(24897935-24898096)
chr6 (172-333)||(29953674-29953835)
chr6 (201-333)||(29949906-29950038)
chr6 (175-333)||(24942058-24942216)
chr6 (175-326)||(24934532-24934683)
chr6 (201-333)||(30053285-30053417)
chr6 (172-332)||(30134984-30135144)
chr6 (175-326)||(24739178-24739329)
chr6 (184-326)||(30154365-30154507)
chr6 (175-333)||(21160608-21160766)
chr6 (185-326)||(30577761-30577902)
[»] scaffold0110 (1 HSPs)
scaffold0110 (172-333)||(43849-44010)
[»] chr4 (1 HSPs)
chr4 (183-326)||(44262584-44262727)
[»] chr7 (1 HSPs)
chr7 (176-264)||(13093518-13093605)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 172 - 333
Target Start/End: Complemental strand, 24226839 - 24226678
Alignment:
Q  172 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24226839 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccttgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 24226740  T
Q  272 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccatattattc 333  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  24226739 gaaccatatttttggaatgcatttctttgaaaagatttgcggcttcatccaccattttattc 24226678  T

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Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 172 - 333
Target Start/End: Complemental strand, 30149546 - 30149385
Alignment:
Q  172 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 271  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||    
T  30149546 tgacctctatcatgcatctcatctataaaatcccaaacatcagatactctccctaatttgcaaagtccatcaataagggaattgtatgttacagtgttag 30149447  T
Q  272 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccatattattc 333  Q
    ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30149446 gaatcatatctttcgaatgcatttctttgaaaagatttacggcttcatccaccattttattc 30149385  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 333
Target Start/End: Complemental strand, 24898096 - 24897935
Alignment:
Q  172 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 271  Q
    ||||||||||||||||| ||| |||| | ||||||||||||| ||||| |||| |||||||||||||||||||| || ||| ||||||||||| | ||||    
T  24898096 tgacctctatcatgcatatcatctataagatcccaaacatcagatattttccccgatttgcaaagtccatcaataagtgaactgtatgctacaatatcag 24897997  T
Q  272 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccatattattc 333  Q
    || |||| |||||  |||||| ||||||||| ||||| || |||||||||||||| ||||||    
T  24897996 gagccatgttttttaaatgcaattctttgaagagattgacagcttcatccaccattttattc 24897935  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 29953674 - 29953835
Alignment:
Q  172 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 271  Q
    |||| ||||| |||||||||| |||| | ||||||||||||| | || |||||||||||||||||||||||||| || |||||||||| ||  || ||||    
T  29953674 tgacatctattatgcatctcatctataagatcccaaacatcagagatgctccctgatttgcaaagtccatcaataagagaattgtatgatattgtatcag 29953773  T
Q  272 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccatattattc 333  Q
    ||  ||||||| |||||||||| |||||||| |||||  | ||||||| |||||| ||||||    
T  29953774 gagtcatatttctggaatgcatatctttgaagagattcgcagcttcattcaccattttattc 29953835  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 333
Target Start/End: Original strand, 29949906 - 29950038
Alignment:
Q  201 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatatttttggaatgcatttctttg 300  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| || |||||||||| |||||| || |||  ||||||  |||||||||||||||||    
T  29949906 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatctggagtcatattactggaatgcatttctttg 29950005  T
Q  301 aaaagatttacggcttcatccaccatattattc 333  Q
    || |||||  | ||||||| |||||| ||||||    
T  29950006 aagagattcgcagcttcattcaccattttattc 29950038  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 175 - 333
Target Start/End: Complemental strand, 24942216 - 24942058
Alignment:
Q  175 cctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaa 274  Q
    ||||||| |||||||||| |||| | ||||||||||||| | ||||| || |||||||||||||||||||| || ||| ||||| ||| | | ||||||     
T  24942216 cctctattatgcatctcatctataagatcccaaacatcagagattcttcccgatttgcaaagtccatcaataagcgaactgtatactataatatcaggag 24942117  T
Q  275 ccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccatattattc 333  Q
    |||| ||| |   ||||| ||||||||| ||||| ||||||||||||||||| ||||||    
T  24942116 ccatgtttcttatatgcaattctttgaagagattgacggcttcatccaccattttattc 24942058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 24934683 - 24934532
Alignment:
Q  175 cctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaa 274  Q
    ||||||| ||||||||||  ||  | ||||||| ||||| | ||||||||  |||||  ||| ||||| || || |||||||||| |||||| | ||||     
T  24934683 cctctattatgcatctcatttacaagatcccaagcatcagagattctcccatatttgagaagaccatcgataagtgaattgtatgttacagtattaggag 24934584  T
Q  275 ccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccat 326  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||||||    
T  24934583 ccatacttttggaatgcatttctttgaagagattaacggcttcatccaccat 24934532  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 333
Target Start/End: Complemental strand, 30053417 - 30053285
Alignment:
Q  201 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatatttttggaatgcatttctttg 300  Q
    ||||||||||||| | ||||| || |||||||||||||||||||| || ||| ||||||  ||||| | ||||  ||| |||||  ||||||||||||||    
T  30053417 atcccaaacatcagagattcttcccgatttgcaaagtccatcaataagtgaactgtatgtaacagtattaggagtcatgttttttaaatgcatttctttg 30053318  T
Q  301 aaaagatttacggcttcatccaccatattattc 333  Q
    ||||| || || |||||||||||||| ||||||    
T  30053317 aaaagtttcacagcttcatccaccattttattc 30053285  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 332
Target Start/End: Complemental strand, 30135144 - 30134984
Alignment:
Q  172 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 271  Q
    |||||||| |||||||||||| |||| | ||||||||||||| |  ||||||| ||| |||||||||||||||| || ||| |||| |  |  |||||||    
T  30135144 tgacctctttcatgcatctcatctataagatcccaaacatcagaggttctccccgatatgcaaagtccatcaataagcgaagtgtacgtgaatgtgtcag 30135045  T
Q  272 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccatattatt 332  Q
    ||  |||  |||||||||||||||| || || ||||| ||||||||||| ||||| |||||    
T  30135044 gagtcattcttttggaatgcatttcgtttaagagattcacggcttcatcaaccattttatt 30134984  T

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Target: chr6; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 175 - 326
Target Start/End: Original strand, 24739178 - 24739329
Alignment:
Q  175 cctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaa 274  Q
    ||||||| ||||||||||  ||  | ||||||| ||||| | |||||||| ||||||  ||| ||||| || || ||| |||||| |||||| | ||||     
T  24739178 cctctattatgcatctcatttacaagatcccaagcatcaaagattctcccagatttgtgaagaccatcgataagtgaactgtatgttacagtattaggag 24739277  T
Q  275 ccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccat 326  Q
    ||||| |||||||||||||||||||||  ||||| |||||||||||||||||    
T  24739278 ccatacttttggaatgcatttctttgaggagattaacggcttcatccaccat 24739329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 326
Target Start/End: Complemental strand, 30154507 - 30154365
Alignment:
Q  184 tgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatatttt 283  Q
    ||||||||| |||| | || |||||||||| | |||||||| ||||||||||| || ||||| ||||||||||||| || ||| | ||||  || | |||    
T  30154507 tgcatctcatctataagataccaaacatcagagattctccccgatttgcaaagcccgtcaataagggaattgtatgttatagtattaggagtcaaacttt 30154408  T
Q  284 tggaatgcatttctttgaaaagatttacggcttcatccaccat 326  Q
    |||||||||||||||| || ||| | || ||||||||||||||    
T  30154407 tggaatgcatttctttaaagagaatcacagcttcatccaccat 30154365  T

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Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 333
Target Start/End: Original strand, 21160608 - 21160766
Alignment:
Q  175 cctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaa 274  Q
    ||||||| ||||||||||  ||  | ||||||| ||||| | ||||||||  |||||  ||| ||||| || || |||||||||| |||| | ||||||     
T  21160608 cctctattatgcatctcatttacaagatcccaagcatcagagattctcccatatttgagaagaccatcgataagtgaattgtatgttacaatatcaggag 21160707  T
Q  275 ccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccatattattc 333  Q
    |||| |||||  ||||||||||||| || ||||| ||||||||||||||||| ||||||    
T  21160708 ccatgttttttaaatgcatttctttaaagagattaacggcttcatccaccattttattc 21160766  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 326
Target Start/End: Original strand, 30577761 - 30577902
Alignment:
Q  185 gcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatattttt 284  Q
    |||||||| |||| | ||||||||||| | | ||||| ||  |||||| |||||| ||||| |||| | |||||| || ||| ||||||  |||| ||||    
T  30577761 gcatctcatctataagatcccaaacataagagattcttcccaatttgccaagtccgtcaataagggtactgtatgttatagtatcaggagtcatactttt 30577860  T
Q  285 ggaatgcatttctttgaaaagatttacggcttcatccaccat 326  Q
    | | ||||||||||| || ||| | || ||||||||||||||    
T  30577861 gaattgcatttctttaaagagaatcacagcttcatccaccat 30577902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 43849 - 44010
Alignment:
Q  172 tgacctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcag 271  Q
    ||||||||||||||||||||| |||| ||||||||| ||||| | ||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||    
T  43849 tgacctctatcatgcatctcatctataaaatcccaagcatcagacattctccctaatttgcaaagtccatcaattaaggaattgtatgttacagtgttag 43948  T
Q  272 gaaccatatttttggaatgcatttctttgaaaagatttacggcttcatccaccatattattc 333  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  43949 gaaccatatttttggaatgcatttctttgaagagattaactgcttcatccaccattttattc 44010  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 183 - 326
Target Start/End: Original strand, 44262584 - 44262727
Alignment:
Q  183 atgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatattt 282  Q
    |||||||||| |||| | ||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||| || ||| || ||| |||| |||    
T  44262584 atgcatctcatctataagatcccaaacatcagatattcttcctgatttgcaaagtccatcaataagtgaattgtatgttatagtatcgggagccatgttt 44262683  T
Q  283 ttggaatgcatttctttgaaaagatttacggcttcatccaccat 326  Q
    ||    |||| ||||||||| ||||| |||||||||||||||||    
T  44262684 tttatttgcagttctttgaagagattgacggcttcatccaccat 44262727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 13093518 - 13093605
Alignment:
Q  176 ctctatcatgcatctcacctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctaca 264  Q
    ||||||| ||||||||| | || | ||| ||||||||||| | |||| |||||||||||||||||||||| || |||||||||| ||||    
T  13093518 ctctatcgtgcatctcatccat-agatcacaaacatcatagaatctctctgatttgcaaagtccatcaataagtgaattgtatgttaca 13093605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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