View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0951_low_23 (Length: 336)
Name: NF0951_low_23
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0951_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 2277669 - 2277391
Alignment:
| Q |
13 |
gaatggagtggaacctcgcaaattcaacggtttataagagaagagggaagtaaacaatatgatataacagaaattaataggaaggaaagtattcctgttt |
112 |
Q |
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| T |
2277669 |
gaatggaatggaacctcgcaaattcaacggtttataagagaagagggaagtaaacaatatgatataacagaaattaataggaaggaaagtattcctgttt |
2277570 |
T |
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| Q |
113 |
caggaacaattcatttcctttcaaaccaaatcagaaaggaactattatatacgcccgcccgcgtatatatgctttgtcgtaaacgtgtaatctctcactt |
212 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
2277569 |
caggaataattcatttcctttcaaaccaaatcaaaaaggaactattatatacgcccgcccgcgtatatatgctttgtcataaacgtgtaatctctcaatt |
2277470 |
T |
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| Q |
213 |
ccta--------tatttctattcaatatctctgccaattgagctaagtttacatggattcattcaaacgcatcttactg |
283 |
Q |
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|||| |||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
2277469 |
cctatttcctgctatttctattcaatatctatgctaattgagctaagttcacatggactcattcaaacgcatcttactg |
2277391 |
T |
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