View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0951_low_25 (Length: 326)

Name: NF0951_low_25
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0951_low_25
NF0951_low_25
[»] chr3 (3 HSPs)
chr3 (165-320)||(40490939-40491094)
chr3 (30-101)||(40491241-40491313)
chr3 (224-276)||(40479263-40479315)
[»] chr5 (2 HSPs)
chr5 (34-90)||(16802036-16802092)
chr5 (51-90)||(39034499-39034538)
[»] chr8 (1 HSPs)
chr8 (31-92)||(30924212-30924273)
[»] chr4 (2 HSPs)
chr4 (30-99)||(39810742-39810811)
chr4 (34-90)||(16831149-16831205)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 165 - 320
Target Start/End: Complemental strand, 40491094 - 40490939
Alignment:
Q  165 ggttatgcacttcacgtgattagttgattgtgaagaccacacatgcacacgaacgaatatgtttgccttttaccctccaactctctttccagtccattcc 264  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40491094 ggttatgcacttcaagtgattagttgattgtgaagaccacacatgtacacgaatgaatatgtttgccttttaccctccaactctctttccagtccattcc 40490995  T
Q  265 atccatgcatgcatgcatgctatgaatcagcttctagaccacctagttcatctcac 320  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  40490994 atccatgcatgcatgcatgctttgaatcagcttctagaccacctagtatatctcac 40490939  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 40491313 - 40491241
Alignment:
Q  30 taaacaaccaaaacaaatatgttttt-ataaaatataatgtaattattacataatcaaaagtaacagcttaca 101  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||| ||||||    
T  40491313 taaacaaccaaaacaaatatattttttataaaatataatgtaattattacatgatgaaaagtaacaacttaca 40491241  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 40479263 - 40479315
Alignment:
Q  224 tgtttgccttttaccctccaactctctttccagtccattccatccatgcatgc 276  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  40479263 tgtttgccttttaccctccaactctctctccaatccattccatccatgtatgc 40479315  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 16802036 - 16802092
Alignment:
Q  34 caaccaaaacaaatatgtttttataaaatataatgtaattattacataatcaaaagt 90  Q
    |||||||||||||||  |||||||||||  ||||||||||||||| |||||||||||    
T  16802036 caaccaaaacaaataactttttataaaaagtaatgtaattattacttaatcaaaagt 16802092  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 39034538 - 39034499
Alignment:
Q  51 tttttataaaatataatgtaattattacataatcaaaagt 90  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  39034538 tttttataaaatatagtgtaattattacttaatcaaaagt 39034499  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 30924273 - 30924212
Alignment:
Q  31 aaacaaccaaaacaaatatgtttttataaaatataatgtaattattacataatcaaaagtaa 92  Q
    |||||||||||| || ||  ||||||||||| ||| |||||||||||| |||||||||||||    
T  30924273 aaacaaccaaaataagtaaatttttataaaaaatagtgtaattattacttaatcaaaagtaa 30924212  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 39810811 - 39810742
Alignment:
Q  30 taaacaaccaaaacaaatatgtttttataaaatataatgtaattattacataatcaaaagtaacagctta 99  Q
    |||||| |||||||||||||||||| || | | ||  |||||||||||| | ||||||||||||| ||||    
T  39810811 taaacatccaaaacaaatatgttttcatgataaattgtgtaattattacttgatcaaaagtaacatctta 39810742  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 16831205 - 16831149
Alignment:
Q  34 caaccaaaacaaatatgtttttataaaatataatgtaattattacataatcaaaagt 90  Q
    |||||||||||||||  |||||||||||  || | |||||||||| |||||||||||    
T  16831205 caaccaaaacaaataactttttataaaaagtagtataattattacttaatcaaaagt 16831149  T

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