View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0951_low_27 (Length: 312)
Name: NF0951_low_27
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0951_low_27 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 90 - 242
Target Start/End: Complemental strand, 58475 - 58322
Alignment:
| Q |
90 |
atattagcctatgctgtagttcgatttgattcaatgactaactaaccattcgtgtcaaagaatatttgcttgttatatctttgtctccaccagagaagaa |
189 |
Q |
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| T |
58475 |
atattagcctatgctgtagttcgatttgattcaatgactaactaaccattcgtgtcaaagaatatttgcttgttatatctttgtctccaccagagaagaa |
58376 |
T |
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| Q |
190 |
agccaaat-ccagaattagtaagcagatgcagcttaggcttgaagcaacagcta |
242 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
58375 |
agccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagcta |
58322 |
T |
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