View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0951_low_3 (Length: 575)

Name: NF0951_low_3
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0951_low_3
NF0951_low_3
[»] chr3 (3 HSPs)
chr3 (374-575)||(8418236-8418437)
chr3 (101-234)||(8417854-8417987)
chr3 (237-316)||(8418106-8418181)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 374 - 575
Target Start/End: Original strand, 8418236 - 8418437
Alignment:
Q  374 caaagtttagtttcactaatgaaattgttctgcttagtgttaatccaataggtagctaaagctataagtagctattcacaagtaactcaatattcgattc 473  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  8418236 caaagtctagtttcactaatgaaattgttctgcttagtgttaatccaataggtagctaaagctataagtagctattcacaagtaatccaatattcgattc 8418335  T
Q  474 ttactcaaccaaattatagttaagaattcaaaatgtggaagttcacatagttaaggttgtctcactttctcacacactgatagaagtgtttgcaacttct 573  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  8418336 ttaatcaaccaaattatagttaagaattcaaaatgtggaagttcacatagttaaggttgtctcactttctcacacattagtagaagtgtttgcaacttct 8418435  T
Q  574 tt 575  Q
    ||    
T  8418436 tt 8418437  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 8417854 - 8417987
Alignment:
Q  101 agttgtggacttgtgtctctcacattatagtcctcttcatgatgactattaggatggccttgttgaacttgagggttaattgcgtgcattgtcattggat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8417854 agttgtggacttgtgtctctcacattatagtcctcttcatgatgactatttggatggccttgttgaacttgagggttaattgcgtgcattgtcattggat 8417953  T
Q  201 tattacctcttggtcttctctttattgacatcat 234  Q
    ||||||||||||||||||||||||||||||||||    
T  8417954 tattacctcttggtcttctctttattgacatcat 8417987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 8418106 - 8418181
Alignment:
Q  237 cgacgatgtttcagccgggaataagcctccttcctctcgtggtggatcgagatttcagtagtttggttatatccaaaagg 316  Q
    ||||||| ||||||||| ||||| ||||| |    |||||||||||||||||||||||||||||||||||||||||||||    
T  8418106 cgacgatatttcagccgagaataggcctcgt----ctcgtggtggatcgagatttcagtagtttggttatatccaaaagg 8418181  T

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