View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0951_low_30 (Length: 310)
Name: NF0951_low_30
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0951_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 30033759 - 30033910
Alignment:
| Q |
88 |
attcatggccttcacaatcacaaccacctccattgttggaggaagagtaactattaggagcaaatttacctaattatttcgaacaaagttttgaacttaa |
187 |
Q |
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| T |
30033759 |
attcatgaccttcacaatcacaaccacctccattgttggaggaagagtaactattaggagcaaatttatctaattatttggaacaaagttctgaatttaa |
30033858 |
T |
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| Q |
188 |
tttaggcatcaagcttctctagaattttaattagatacctcttatcaatatt |
239 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
30033859 |
tttaggcatcaagcttctctcgaattttaattagatacctcctatcaatatt |
30033910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 23147490 - 23147339
Alignment:
| Q |
88 |
attcatggccttcacaatcacaaccacctccattgttggaggaagagtaactattaggagcaaatttacctaattatttcgaacaaagttttgaacttaa |
187 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||| |||| |||| |
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| T |
23147490 |
attcatggccttaacaatcacaaccgcctccattgttggaggaagagtaactattaggggcaaatttatctaattatatggaacaaagttatgaatttaa |
23147391 |
T |
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| Q |
188 |
tttaggcatcaagcttctctagaattttaattagatacctcttatcaatatt |
239 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
23147390 |
tttaggcatcaagcttctctcgaattttaattagatacctcatatcaatatt |
23147339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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