View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0951_low_38 (Length: 279)
Name: NF0951_low_38
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0951_low_38 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 69 - 279
Target Start/End: Original strand, 10218537 - 10218746
Alignment:
| Q |
69 |
gaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaaggtttatgctatataattttgtttgtgtggaaaaat |
168 |
Q |
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| T |
10218537 |
gaagggatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaaggtttatgctatata-ttttgtttgtgtggaaaaat |
10218635 |
T |
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| Q |
169 |
tatgtggaacagagaagaagcatatgcgttcaaattctagtggtaagagctagcattggagccaaagtgaatcacaaattcacaatttaatgtgattata |
268 |
Q |
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| T |
10218636 |
tatgtggaacagagaagaagcatatgcgttcaaattctagtggtaagagctagcattggagccaaagtgaatcacaaattcacaatttaatgtgattata |
10218735 |
T |
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| Q |
269 |
tggactttttg |
279 |
Q |
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| T |
10218736 |
tggactttttg |
10218746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 11050330 - 11050492
Alignment:
| Q |
56 |
caaaatagaaaatgaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattcggtttaggagaaaggtttatgctatataattttgtt |
155 |
Q |
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| T |
11050330 |
caaaaaagaaaatgaaggtatacaaacaaaagtataggtgataagaaagaaaaaggcttcattcggtttaggagaaaggtttatgctgtatatttttgtt |
11050429 |
T |
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| Q |
156 |
tgtgtggaaaaattatg-tggaacagagaagaagcatatgcgttcaaattctagtggtaagag |
217 |
Q |
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| T |
11050430 |
tgtgtggaaaaattatgttggaatagagaagaaacatatgcatttaaattatagtggtaagag |
11050492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 12897265 - 12897185
Alignment:
| Q |
83 |
aaaagtataggtgacaggaaagaaaaaggcttcattc-ggtttaggagaaag--gtttatgctatataattttgtttgtgt |
160 |
Q |
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| T |
12897265 |
aaaagtgtaggtgacaacaaagaaaaagacttcattttggtttagaagaaagtggtttatgctatttaattttgtttgtgt |
12897185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 12930023 - 12929896
Alignment:
| Q |
30 |
aaaaccacattaaatttaaggaaaaccaaaatagaaaatgaaggtatacaaacaaaagtataggtgacaggaaagaaaaaggcttcattc-ggtttagga |
128 |
Q |
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| T |
12930023 |
aaaaccacattaaatttaaggtaatcataaaaaggagatgaaggtata------aaagtgtaggtgacaacaaagaaaaagacttcattttggtttagaa |
12929930 |
T |
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| Q |
129 |
gaaag--gtttatgctatataattttgtttgtgt |
160 |
Q |
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| T |
12929929 |
gaaagtggtttatgctatttagttttgtttgtgt |
12929896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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