View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0951_low_4 (Length: 493)
Name: NF0951_low_4
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0951_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 59 - 487
Target Start/End: Complemental strand, 23989559 - 23989131
Alignment:
| Q |
59 |
atatacatcatgtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatctcattgtgcagtccgttccatagatactcat |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989559 |
atatacatcatgtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatctcattgtgcagtccgttccatagatactcat |
23989460 |
T |
|
| Q |
159 |
tgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcactgaccctcgatcgaaactacattcaaccgatcctcctttgaaacttcaca |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989459 |
tgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcactgaccctcgatcgaaactacattcaaccgatcctcctttgaaacttcaca |
23989360 |
T |
|
| Q |
259 |
taacatatcgtcgtaatgatcctcctcactcatctgatcatcctcatattcattctgttgatgctcaggtgaatcatcatacaactgatcctcatgcata |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23989359 |
taacatatcgtcgtaatgatcctcctcactcatctgatcatcctcatattcattctgttgatgctcaggtgaatcatcatacaactgatcctcatgcgta |
23989260 |
T |
|
| Q |
359 |
tctccattcttctgattctcaaccgaattctacacatnnnnnnnntaataagttaatgagaccacatcatcattaattatcataaccataataagcaacg |
458 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23989259 |
tctccattcttctgattctcaaccgaattctacacataaaaataataataagttaatgagaccacatcatcattaattatcataaccataataagcaacg |
23989160 |
T |
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| Q |
459 |
aagaacaattttaaacaaagaatattctt |
487 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
23989159 |
aagaacaattttaaacaaagaataatctt |
23989131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 228 - 395
Target Start/End: Complemental strand, 23982612 - 23982442
Alignment:
| Q |
228 |
cattcaaccgatcctcctttgaaacttcacataacatatcgtcgtaatgatcctcctcactcatctgatcatcctcatattcattctgttgatgctcagg |
327 |
Q |
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||||||||||| | || ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23982612 |
cattcaaccgaccgtcgtttgaaacttcgcataacatatcctcataatgatcctcatcactcatctgatcatcctcatcttcattctgttgatgctcagg |
23982513 |
T |
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| Q |
328 |
---tgaatcatcatacaactgatcctcatgcatatctccattcttctgattctcaaccgaattctacacat |
395 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |
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| T |
23982512 |
tactgaatcatcatacaactgatcctcatgcatatccccattcttcagattcacaaccgaattctacacat |
23982442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 23982877 - 23982708
Alignment:
| Q |
59 |
atatacatcatgtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatctcattgtgcagtccgttccatagatact--- |
155 |
Q |
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|||||||||||||||||||||||||||||||| |||| || ||||||||||||| ||||||||| |||||| ||||| |||||||||||| || |
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| T |
23982877 |
atatacatcatgtgacatacccttttaagagacgagattggtaaacaactgtaaaattgttcaaaggtctcatcaggcagtgcgttccatagatccttaa |
23982778 |
T |
|
| Q |
156 |
cattgtaatcatcattccacccgtgatgatcctcatacaaattctcattgcactgaccctcgatcgaaac |
225 |
Q |
| |
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|| | |||||| |||||||| ||||| ||||||| |||||||||||| ||||||||||| || ||||| |
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| T |
23982777 |
caaaatcatcatcgttccacccatgatgttcctcatgcaaattctcattccactgaccctcaattgaaac |
23982708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 23965559 - 23965494
Alignment:
| Q |
70 |
gtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatctcattgtg |
135 |
Q |
| |
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|||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
23965559 |
gtgacataccctattcagagatgagacagagaaacaactgtaaacatgttcaaagatctcattgtg |
23965494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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