View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0951_low_5 (Length: 469)

Name: NF0951_low_5
Description: NF0951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0951_low_5
NF0951_low_5
[»] chr1 (11 HSPs)
chr1 (34-387)||(15824425-15824780)
chr1 (402-459)||(19367483-19367540)
chr1 (402-459)||(35070043-35070100)
chr1 (402-459)||(1961646-1961703)
chr1 (402-459)||(18098383-18098440)
chr1 (402-459)||(20429361-20429418)
chr1 (402-459)||(22116351-22116408)
chr1 (405-459)||(1955829-1955883)
chr1 (402-459)||(44832556-44832613)
chr1 (402-444)||(2336072-2336114)
chr1 (405-459)||(47108384-47108438)
[»] chr2 (11 HSPs)
chr2 (402-459)||(11873690-11873747)
chr2 (402-459)||(20279332-20279389)
chr2 (402-459)||(18289-18346)
chr2 (402-459)||(18500234-18500291)
chr2 (402-459)||(38084468-38084525)
chr2 (402-459)||(36735341-36735398)
chr2 (402-459)||(5871111-5871168)
chr2 (402-459)||(5874252-5874309)
chr2 (416-459)||(29586096-29586139)
chr2 (402-451)||(12370462-12370511)
chr2 (403-433)||(45499001-45499031)
[»] scaffold0290 (1 HSPs)
scaffold0290 (402-459)||(22054-22111)
[»] scaffold0167 (1 HSPs)
scaffold0167 (402-459)||(7988-8045)
[»] scaffold0027 (2 HSPs)
scaffold0027 (402-459)||(23591-23648)
scaffold0027 (402-452)||(397-447)
[»] scaffold0001 (1 HSPs)
scaffold0001 (402-459)||(96790-96847)
[»] chr8 (14 HSPs)
chr8 (402-459)||(14891862-14891919)
chr8 (402-459)||(22162987-22163044)
chr8 (402-459)||(32025654-32025711)
chr8 (402-459)||(15061336-15061393)
chr8 (402-459)||(20733168-20733225)
chr8 (402-459)||(22156978-22157035)
chr8 (402-459)||(25859275-25859332)
chr8 (402-459)||(31999771-31999828)
chr8 (405-459)||(20725209-20725263)
chr8 (405-459)||(20738107-20738161)
chr8 (404-458)||(25853031-25853085)
chr8 (402-456)||(32006742-32006795)
chr8 (402-452)||(12307679-12307729)
chr8 (402-451)||(6030856-6030905)
[»] chr7 (10 HSPs)
chr7 (402-459)||(34132822-34132879)
chr7 (402-459)||(22346875-22346932)
chr7 (402-459)||(34139134-34139191)
chr7 (402-459)||(43906107-43906164)
chr7 (403-459)||(13270887-13270943)
chr7 (402-459)||(1858567-1858624)
chr7 (402-459)||(18779065-18779122)
chr7 (402-459)||(28415158-28415215)
chr7 (402-458)||(6852014-6852070)
chr7 (402-452)||(23878702-23878752)
[»] chr6 (15 HSPs)
chr6 (402-459)||(12667538-12667595)
chr6 (402-459)||(18960997-18961054)
chr6 (402-459)||(28702888-28702945)
chr6 (401-459)||(14176930-14176988)
chr6 (402-459)||(10985075-10985132)
chr6 (402-459)||(19713688-19713745)
chr6 (402-459)||(20452658-20452715)
chr6 (402-459)||(19719844-19719901)
chr6 (402-459)||(20459459-20459516)
chr6 (402-459)||(22779140-22779197)
chr6 (403-459)||(17784071-17784127)
chr6 (402-450)||(26896475-26896523)
chr6 (405-459)||(19898961-19899015)
chr6 (402-452)||(615926-615976)
chr6 (402-452)||(623827-623877)
[»] chr5 (14 HSPs)
chr5 (402-459)||(20092753-20092810)
chr5 (402-459)||(36448257-36448314)
chr5 (404-459)||(23378301-23378356)
chr5 (402-459)||(20099650-20099707)
chr5 (402-459)||(20639863-20639920)
chr5 (402-459)||(25532876-25532933)
chr5 (402-459)||(26186649-26186706)
chr5 (405-459)||(37048355-37048409)
chr5 (402-459)||(15956982-15957039)
chr5 (402-459)||(25526196-25526253)
chr5 (402-459)||(36454635-36454692)
chr5 (402-459)||(40014884-40014941)
chr5 (405-459)||(25042281-25042335)
chr5 (402-452)||(11939621-11939671)
[»] chr4 (12 HSPs)
chr4 (402-459)||(19738009-19738066)
chr4 (402-459)||(20548389-20548446)
chr4 (402-459)||(20555013-20555070)
chr4 (402-459)||(50187791-50187848)
chr4 (402-459)||(3382445-3382502)
chr4 (402-450)||(39745430-39745478)
chr4 (402-456)||(3389196-3389250)
chr4 (402-452)||(22175845-22175895)
chr4 (402-451)||(15580490-15580539)
chr4 (402-451)||(39534183-39534232)
chr4 (402-451)||(3439634-3439683)
chr4 (402-459)||(4619228-4619285)
[»] chr3 (25 HSPs)
chr3 (402-459)||(13111787-13111844)
chr3 (402-459)||(14893146-14893203)
chr3 (402-459)||(16031259-16031316)
chr3 (402-459)||(21638561-21638618)
chr3 (402-458)||(4313596-4313652)
chr3 (402-456)||(261372-261426)
chr3 (405-459)||(13105639-13105693)
chr3 (402-459)||(14881315-14881372)
chr3 (402-459)||(14888041-14888098)
chr3 (402-459)||(23288122-23288179)
chr3 (402-459)||(8612630-8612687)
chr3 (402-459)||(11180768-11180825)
chr3 (402-459)||(30102452-30102509)
chr3 (402-455)||(48060734-48060787)
chr3 (402-456)||(68153-68207)
chr3 (402-456)||(74246-74300)
chr3 (402-459)||(8606170-8606227)
chr3 (402-459)||(12550419-12550476)
chr3 (402-459)||(3404760-3404817)
chr3 (405-453)||(49967365-49967413)
chr3 (402-452)||(37470147-37470197)
chr3 (402-452)||(20603997-20604047)
chr3 (402-452)||(37256102-37256152)
chr3 (402-452)||(37265938-37265988)
chr3 (402-451)||(13086562-13086611)
[»] scaffold0016 (1 HSPs)
scaffold0016 (404-459)||(14109-14164)
[»] scaffold1922 (1 HSPs)
scaffold1922 (402-459)||(216-273)
[»] scaffold0473 (1 HSPs)
scaffold0473 (402-459)||(9163-9220)
[»] scaffold0320 (1 HSPs)
scaffold0320 (402-459)||(6321-6378)
[»] scaffold0150 (1 HSPs)
scaffold0150 (402-459)||(38599-38656)
[»] scaffold0085 (1 HSPs)
scaffold0085 (402-459)||(7799-7856)
[»] scaffold0050 (1 HSPs)
scaffold0050 (402-459)||(27716-27773)
[»] scaffold0028 (1 HSPs)
scaffold0028 (402-459)||(65846-65903)
[»] scaffold0630 (1 HSPs)
scaffold0630 (403-459)||(1378-1434)
[»] scaffold0351 (1 HSPs)
scaffold0351 (405-459)||(7641-7695)
[»] scaffold0046 (1 HSPs)
scaffold0046 (405-459)||(86697-86751)
[»] scaffold0253 (2 HSPs)
scaffold0253 (402-459)||(10347-10404)
scaffold0253 (402-459)||(19772-19829)
[»] scaffold0039 (1 HSPs)
scaffold0039 (402-459)||(89874-89931)
[»] scaffold0306 (1 HSPs)
scaffold0306 (402-456)||(15652-15706)
[»] scaffold0328 (1 HSPs)
scaffold0328 (402-459)||(177-234)
[»] scaffold0029 (1 HSPs)
scaffold0029 (402-444)||(38088-38130)
[»] scaffold0023 (1 HSPs)
scaffold0023 (402-449)||(150634-150681)
[»] scaffold1888 (1 HSPs)
scaffold1888 (402-451)||(1058-1107)
[»] scaffold0505 (1 HSPs)
scaffold0505 (402-451)||(11478-11527)
[»] scaffold0441 (1 HSPs)
scaffold0441 (402-451)||(2479-2528)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 34 - 387
Target Start/End: Complemental strand, 15824780 - 15824425
Alignment:
Q  34 acactgtagagcccagcacccgtcacacataggaatggtgaatattaacggttgccctgcacagctacttatatacttcctccggtcagtattataagnn 133  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||| ||||||||| |||| ||||| |||||||||      
T  15824780 acactatagagcccagcacccgtcacacataggaaaagtgaatattaacggttgcccagcacagctatttatatactccctcgggtcaatattataagaa 15824681  T
Q  134 nnnnntcacttttta-taatattacaattatagcggtaattaagaacattacaattacttgagtcnnnnnnnn-gaacattacaattacttgtacgagcg 231  Q
         |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||    
T  15824680 aaaaatcactttttagtaatattacaattatagcggtaattaagaacattacaattacttgtgtcaaaaaaaaagaacattacaattacttgtacgagcg 15824581  T
Q  232 acttagctcccgagaaaggcaaggcacaacttacaacaaggaggagtatcttaatttgttacacttacacttaggcaagggacaacttacaatagtgctc 331  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  15824580 acttagctcccgagaaaggcaacgcacaacttacaacaaggaggagtatcttaatttgttacacttacacttcggcaaggcacaacttacaatagtgctc 15824481  T
Q  332 atttgttacacttacaaaagttggatataaatgatatttgtcctcttaatttgtta 387  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15824480 atttgttacacttacaaaagttggatataaatgatatttgtactcttaatttgtta 15824425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 19367483 - 19367540
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19367483 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 19367540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 35070043 - 35070100
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35070043 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 35070100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 1961646 - 1961703
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  1961646 cccaatttttgacctaaggccccactgacacataacacttgactctgatcgatctctg 1961703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 18098383 - 18098440
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  18098383 cccaatttttaacctaaggccccactaacacatgtcacttgactctgatcgatctctg 18098440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 20429361 - 20429418
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  20429361 cccaatttttgacctaaggtcccactgacacttgtcacttgactctgatcgatctctg 20429418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 22116408 - 22116351
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  22116408 cccaatttttgacctaaggccccactgacacatgtcactcaactctgatcgatctctg 22116351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 1955829 - 1955883
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  1955829 aatttttgacctaaggccccactgacacgtatcacttgactctgatcgatctctg 1955883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 44832613 - 44832556
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||    
T  44832613 cccaatttttaacctaaggcttcactgacacatgtcacttgactctgatcgatctctg 44832556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 2336114 - 2336072
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgac 444  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  2336114 cccaatttttgacctaaggccccactgacacatgtcacttgac 2336072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 47108384 - 47108438
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||| |||||||  |||||| |||||||||||||||||||||||||||||||    
T  47108384 aatttttaacctaaggtcccacttacacatgtcacttgactctgatcgatctctg 47108438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 11873690 - 11873747
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11873690 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 11873747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 20279389 - 20279332
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20279389 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 20279332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 18346 - 18289
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  18346 cccaatttttgacctaaggccccactgagacatgtcacttgactctgatcgatctctg 18289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 18500234 - 18500291
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  18500234 cccaatttttgatctaaggccccactgacacatgtcacttgactctgatcgatctctg 18500291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 38084525 - 38084468
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  38084525 cccaatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 38084468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 36735341 - 36735398
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  36735341 cccaatttttgacctaaggccccactgacacatgtcactcgactctgatccatctctg 36735398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 5871168 - 5871111
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||    
T  5871168 cccaatttttgacctaagggcccactgacacatatcactcgactctgatcgatctctg 5871111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 5874309 - 5874252
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||    
T  5874309 cccaatttttgacctaagggtccactgacacatgtcactcgactctgatcgatctctg 5874252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 459
Target Start/End: Original strand, 29586096 - 29586139
Alignment:
Q  416 taagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  29586096 taaggccccactgacacatgtcacttgactctgatcgatctctg 29586139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 12370511 - 12370462
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatc 451  Q
    |||||||||||||| |||| ||||||||||| ||||| ||||||||||||    
T  12370511 cccaatttttgacccaagatcccactgacacgtgtcatttgactctgatc 12370462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 433
Target Start/End: Complemental strand, 45499031 - 45499001
Alignment:
Q  403 ccaatttttgacctaagaccccactgacaca 433  Q
    |||||||||||||||||||||||||||||||    
T  45499031 ccaatttttgacctaagaccccactgacaca 45499001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 22054 - 22111
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22054 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 22111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 7988 - 8045
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7988 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 8045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 23591 - 23648
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23591 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 23648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 447 - 397
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||| |||||||    
T  447 cccaaattttgacccaagatcccactgacacgtgtcacttgaccctgatcg 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 96790 - 96847
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  96790 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 96847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 14891919 - 14891862
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14891919 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 14891862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 22163044 - 22162987
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  22163044 cccaatttttgacctaagggcccactgacacatgtcacttgactctgatcgatctctg 22162987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 32025711 - 32025654
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  32025711 cccaatttttgacctaagaccccactgacacatgtcactcgattctgatcgatctctg 32025654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 15061393 - 15061336
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||    
T  15061393 cccaatttttgacctaaggccccactgacacgtgtcacttaactctgatcgatctctg 15061336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 20733168 - 20733225
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  20733168 cccaatttttgacctaaggccccattgacacgtgtcacttgactctgatcgatctctg 20733225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 22157035 - 22156978
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  22157035 cccaatttttgacctaagggcccactaacacatgtcacttgactctgatcgatctctg 22156978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 25859332 - 25859275
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  25859332 cccaatttttgacctaaggccccactgtcacatgtcactcgactctgatcgatctctg 25859275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 31999771 - 31999828
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||| |||  |||||||||| ||| ||||||||||||||||||    
T  31999771 cccaatttttgacctaagatcccgttgacacatgtaactcgactctgatcgatctctg 31999828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 20725209 - 20725263
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||| ||||||| ||| ||| |||| ||||||||||||||||||||||||||    
T  20725209 aattttttacctaaggcccgactaacacgtgtcacttgactctgatcgatctctg 20725263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 20738107 - 20738161
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||| ||||||| ||| ||| |||| ||||||||||||||||||||||||||    
T  20738107 aattttttacctaaggcccgactaacacgtgtcacttgactctgatcgatctctg 20738161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 458
Target Start/End: Complemental strand, 25853085 - 25853031
Alignment:
Q  404 caatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctct 458  Q
    ||||||||  |||| | |||||||||||||||||||| |||||||||||||||||    
T  25853085 caattttttgcctacggccccactgacacatgtcactcgactctgatcgatctct 25853031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 32006742 - 32006795
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatct 456  Q
    ||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||    
T  32006742 cccaatttttgacctaagacccg-ctgacacatatcactcgactctgatcgatct 32006795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 12307729 - 12307679
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||| |||||||    
T  12307729 cccaaattttgacccaagatcccactgacacgtgtcacttgaccctgatcg 12307679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 6030856 - 6030905
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatc 451  Q
    ||||||||||||||||||  ||||||||| ||||||| ||||| ||||||    
T  6030856 cccaatttttgacctaaggtcccactgacgcatgtcatttgaccctgatc 6030905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 34132879 - 34132822
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34132879 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 34132822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 22346875 - 22346932
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  22346875 cccaatttttgtcctaaggccccactgacacatgtcacttgactctgatcgatctctg 22346932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 34139191 - 34139134
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  34139191 cccaatttttgatctaaggctccactgacacatgtcacttgactctgatcgatctctg 34139134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 43906107 - 43906164
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  43906107 cccaatttttgacctaaggccccactgacacatgtcacttgatcctgatcgatctctg 43906164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 13270943 - 13270887
Alignment:
Q  403 ccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  13270943 ccaatttttgacctaaggccccactgacacatgtcactcgagtctgatcgatctctg 13270887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 1858624 - 1858567
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||    
T  1858624 cccaatttttgacctaaggccccactgacacatgtcactcgactatgatcaatctctg 1858567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 18779122 - 18779065
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||    
T  18779122 cccaatttttgacctaaggccccgctgacacatgtcactcgactctaatcgatctctg 18779065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 28415158 - 28415215
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  28415158 cccaattttttacctaaggccccgctgacacatgtcactcgactctgatcgatctctg 28415215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 6852070 - 6852014
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctct 458  Q
    |||||||||| |||||||  |||||||||||||| | || |||||||||||||||||    
T  6852070 cccaatttttaacctaaggtcccactgacacatgccgctcgactctgatcgatctct 6852014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 23878752 - 23878702
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||| |||||||    
T  23878752 cccaaattttgacccaagatcccactgacacgtgtcacttgaccctgatcg 23878702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 12667595 - 12667538
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12667595 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 12667538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 18961054 - 18960997
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18961054 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 18960997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 28702945 - 28702888
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28702945 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 28702888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 401 - 459
Target Start/End: Original strand, 14176930 - 14176988
Alignment:
Q  401 acccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  14176930 acccaatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 14176988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 10985132 - 10985075
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  10985132 cccaatttttgacctaagaccccactaacacatgtcacttgactctgatccatctctg 10985075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 19713688 - 19713745
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  19713688 cccaatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 19713745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 20452715 - 20452658
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  20452715 cccaatttttgacctaaggctccactgacacatgtcacttgactctgatcgatctctg 20452658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 19719844 - 19719901
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  19719844 cccaatttttgacctaaggccccactgacacatgtcactcgactctgattgatctctg 19719901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 20459516 - 20459459
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  20459516 cccaatttttgacctaaggccccagtgacacatgtcacttgactctgattgatctctg 20459459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 22779197 - 22779140
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  22779197 cccaatttttgacctaatgccccactgacacgtgtcacttgactctgatcgatctctg 22779140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 17784127 - 17784071
Alignment:
Q  403 ccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  17784127 ccaatttttgacctaaggctccactgacacatgtcactcgactctgatcgatctctg 17784071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 26896475 - 26896523
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgat 450  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  26896475 cccaatttttgacctaaggccccactgacacatgtcacttaactctgat 26896523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 19898961 - 19899015
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||    
T  19898961 aatttttgacctaaggccccactggcacatgtcactcgactctgattgatctctg 19899015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 615976 - 615926
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||| |||||||    
T  615976 cccaaattttgacccaagatcccactgacacgtgtcacttgaccctgatcg 615926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 623877 - 623827
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||| |||||||    
T  623877 cccaaattttgacccaagatcccactgacacgtgtcacttgaccctgatcg 623827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 20092810 - 20092753
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20092810 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 20092753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 36448257 - 36448314
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36448257 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 36448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 404 - 459
Target Start/End: Complemental strand, 23378356 - 23378301
Alignment:
Q  404 caatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23378356 caatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 23378301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 20099707 - 20099650
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  20099707 cccaatttttgacctaaggccccactaacacatgtcacttgactctgatcgatctctg 20099650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 20639920 - 20639863
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  20639920 cccaatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 20639863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 25532876 - 25532933
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  25532876 cccaatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 25532933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 26186706 - 26186649
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  26186706 cccaatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 26186649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 37048355 - 37048409
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  37048355 aatttttgacctaagatcccactgacacgtgtcacttgactctgatcgatctctg 37048409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 15957039 - 15956982
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  15957039 cccaatttttgacctaaggttccactgacacatgtcacttgactctgatcgatctctg 15956982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 25526196 - 25526253
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  25526196 cccaatttttgacctaaggccccactgacacatgtcactcgaatctgatcgatctctg 25526253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 36454635 - 36454692
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  36454635 cccaatttttgacctaaggcctcacggacacatgtcacttgactctgatcgatctctg 36454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 40014884 - 40014941
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  40014884 cccaatttttgacttaaggtcccactgacacatgtcacttgactctgatcgatctctg 40014941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 25042335 - 25042281
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||| | ||||||| || ||||||||||||||| ||||||||||    
T  25042335 aatttttgacctaaggctccactgatacgtgtcacttgactctgttcgatctctg 25042281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 11939671 - 11939621
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||| |||||||    
T  11939671 cccaaattttgacccaagatcccactgacacgtgtcacttgaccctgatcg 11939621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 19738066 - 19738009
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19738066 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 19738009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 20548389 - 20548446
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20548389 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 20548446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 20555013 - 20555070
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20555013 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 20555070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 50187791 - 50187848
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  50187791 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcaatctctg 50187848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 3382502 - 3382445
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  3382502 cccaatttttgacctaaggccccactgacacatgtcactcgactctgctcgatctctg 3382445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 39745478 - 39745430
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgat 450  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||    
T  39745478 cccaatttttgacctaaggccccactgacacatgtcactcgactctgat 39745430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 3389250 - 3389196
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatct 456  Q
    |||||||||||||||||| |||||||||||||||||||| ||  |||||||||||    
T  3389250 cccaatttttgacctaaggccccactgacacatgtcactcgatactgatcgatct 3389196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 22175895 - 22175845
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    |||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  22175895 cccaatttttgacctaaggccccactgacacgtgtcacttgaccctgatcg 22175845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 15580539 - 15580490
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatc 451  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||| ||||||    
T  15580539 cccaatttttgacctaagatcccactgacgcatgtcatttgaccctgatc 15580490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 39534183 - 39534232
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatc 451  Q
    |||||||||||||| |||| ||||||||||| ||||| ||||||||||||    
T  39534183 cccaatttttgacccaagatcccactgacacgtgtcatttgactctgatc 39534232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 3439634 - 3439683
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatc 451  Q
    ||||||||||||||||||  ||||||||| ||||||| ||||| ||||||    
T  3439634 cccaatttttgacctaaggtcccactgacgcatgtcatttgacactgatc 3439683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 4619228 - 4619285
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||| |  |||||||||||||||| || || |||||| |||||||    
T  4619228 cccaatttttgacctaaaataccactgacacatgtcatttaaccctgatcaatctctg 4619285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 13111844 - 13111787
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13111844 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 13111787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 14893203 - 14893146
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14893203 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 14893146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 16031316 - 16031259
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16031316 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 16031259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 21638618 - 21638561
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21638618 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 21638561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 4313652 - 4313596
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctct 458  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4313652 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctct 4313596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 261372 - 261426
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatct 456  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  261372 cccaatttttgacctaaggccccactgacacatgtcacttgactctgatcgatct 261426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 13105693 - 13105639
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13105693 aatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 13105639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 14881372 - 14881315
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  14881372 cccaatttttgacctaaggccccaccgacacatgtcacttgactctgatcgatctctg 14881315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 14888098 - 14888041
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  14888098 cccaatttttgacctaaggctccactgacacatgtcacttgactctgatcgatctctg 14888041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 23288179 - 23288122
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  23288179 cccaatttttgacctaaggccccacttacacatgtcacttgactctgatcgatctctg 23288122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 8612630 - 8612687
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  8612630 cccaatttttgacctaagagcccactgagacatgtcactcgactctgatcgatctctg 8612687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 11180768 - 11180825
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||    
T  11180768 cccaatttttaacctaaggccccactgacacatgtcactcgactctgatcgatctctg 11180825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 30102509 - 30102452
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  30102509 cccaatttttgacttaaggccccactgatacatgtcacttgactctgatcgatctctg 30102452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 48060787 - 48060734
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatc 455  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  48060787 cccaatttttgacctaaggcctcactgacacatgtcacttgactctgatcgatc 48060734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 68153 - 68207
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatct 456  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  68153 cccaatttttgacctaacgccccactggcacatgtcacttgactctgatcgatct 68207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 74246 - 74300
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatct 456  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  74246 cccaatttttgacctaacgccccactggcacatgtcacttgactctgatcgatct 74300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 8606170 - 8606227
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||    
T  8606170 cccaatttttgacctaagagcccactgaaacatgtcactcgactctaatcgatctctg 8606227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 12550419 - 12550476
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||    
T  12550419 cccaatttttgacctaaggccccagtgacacatgtcactcgactccgatcgatctctg 12550476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 3404760 - 3404817
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||| ||||||| |||||||||||||||||| | |||||| |||||||||||    
T  3404760 cccaattttttacctaaggccccactgacacatgtcattcgactctaatcgatctctg 3404817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 49967365 - 49967413
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcga 453  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  49967365 aatttttgacctaaggccccactgacacgtgtcacttgaccctgatcga 49967413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 452
Target Start/End: Original strand, 37470147 - 37470197
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    |||||||||||||||||| ||||||| |||| ||||||||||| |||||||    
T  37470147 cccaatttttgacctaaggccccactaacacgtgtcacttgaccctgatcg 37470197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 20604047 - 20603997
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||| |||||||    
T  20604047 cccaaattttgacccaagatcccactgacacgtgtcacttgaccctgatcg 20603997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 37256152 - 37256102
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||| |||||||    
T  37256152 cccaaattttgacccaagatcccactgacacgtgtcacttgaccctgatcg 37256102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 37265988 - 37265938
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcg 452  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||| |||||||    
T  37265988 cccaaattttgacccaagatcccactgacacgtgtcacttgaccctgatcg 37265938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 13086562 - 13086611
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatc 451  Q
    ||||||||||||||||||  |||||| |||||||||| ||||| ||||||    
T  13086562 cccaatttttgacctaaggtcccactaacacatgtcatttgaccctgatc 13086611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 404 - 459
Target Start/End: Original strand, 14109 - 14164
Alignment:
Q  404 caatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14109 caatttttgacctaaggccccactgacacatgtcacttgactctgatcgatctctg 14164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1922 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1922
Description:

Target: scaffold1922; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 273 - 216
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  273 cccaatttttgacctaatgccccactgacacatgtcacttgactctgatcgatctctg 216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 9220 - 9163
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  9220 cccaatttttgacctaaggcctcactgacacatgtcacttgactctgatcgatctctg 9163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 6378 - 6321
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  6378 cccaatttttgtcctaaggccccactgacacatgtcacttgactctgatcgatctctg 6321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 38656 - 38599
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  38656 cccaatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 38599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 7856 - 7799
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  7856 cccaatttttgacctaaggccccactaacacatgtcacttgactctgatcgatctctg 7799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 27773 - 27716
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  27773 cccaatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 27716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 65846 - 65903
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  65846 cccaatttttgacctaaggccccactcacacatgtcacttgactctgatcgatctctg 65903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 1434 - 1378
Alignment:
Q  403 ccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  1434 ccaatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 7695 - 7641
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  7695 aatttttgacctaaggccccactgacacttgtcacttgactctgatcgatctctg 7641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 86751 - 86697
Alignment:
Q  405 aatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  86751 aatttttgacctaaggccccactgacacatgtcactcgactctgatcgatctctg 86697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 10347 - 10404
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  10347 cccaatttttgacctaaggccccgctgacacatgtcactcgactctgatcgatctctg 10404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 19772 - 19829
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  19772 cccaatttttgacctaaggccccgctgacacatgtcactcgactctgatcgatctctg 19829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 89931 - 89874
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||    
T  89931 cccaatttttgacctaaggccccactgacatatgtcacttgactcttatcgatctctg 89874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 15652 - 15706
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatct 456  Q
    |||||||||||  ||||| ||||||||||||||||||||||||||||||||||||    
T  15652 cccaatttttgttctaaggccccactgacacatgtcacttgactctgatcgatct 15706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 234 - 177
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatcgatctctg 459  Q
    |||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||    
T  234 cccaatttttgacctaaggcctcactgacacttgtcactcgactctgatcgatctctg 177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 38130 - 38088
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgac 444  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  38130 cccaatttttgacctaaggccccactgacacgtgtcacttgac 38088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 449
Target Start/End: Complemental strand, 150681 - 150634
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctga 449  Q
    ||||||||||||||||||||  ||||||||||||||| || |||||||    
T  150681 cccaatttttgacctaagacaacactgacacatgtcatttaactctga 150634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1888 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1888
Description:

Target: scaffold1888; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 1107 - 1058
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatc 451  Q
    |||||||||||||| |||| ||||| ||||| ||||||||||| ||||||    
T  1107 cccaatttttgacccaagatcccaccgacacgtgtcacttgaccctgatc 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 11478 - 11527
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatc 451  Q
    ||||||||||||||||||  |||||| |||||||||| ||||| ||||||    
T  11478 cccaatttttgacctaaggacccactaacacatgtcatttgaccctgatc 11527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 2479 - 2528
Alignment:
Q  402 cccaatttttgacctaagaccccactgacacatgtcacttgactctgatc 451  Q
    ||||||||||||||||||  ||||||||| ||||||| ||||| ||||||    
T  2479 cccaatttttgacctaaggtcccactgacgcatgtcatttgaccctgatc 2528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University