View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_high_1 (Length: 618)
Name: NF0952_high_1
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 16 - 584
Target Start/End: Complemental strand, 11542944 - 11542376
Alignment:
| Q |
16 |
atctatgccactaatcttcactaatccagaatatttggaagattcttcacacacattcgcacctttaaagtgattgttcttgggaaaaacttgctcataa |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11542944 |
atctatgccactaatcttcactaatccagaatatttggaagattcttcacacacattcgcacctttaaagtgattgttcttgggaaaaacttgttcataa |
11542845 |
T |
|
| Q |
116 |
ctttcgcgatgaagagtgtacccatcttgaatatttggagatttgacccaaaaaggctcattaactctcacaagcctaaccaattcatccattgcagcat |
215 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542844 |
ctttcgcgatgaaaagtgtacccatcttgagtatttggagatttgacccaaaaaggctcattaactctcacaagcctaaccaattcatccattgcagcat |
11542745 |
T |
|
| Q |
216 |
ctacaacttgtgacatagttatcttttgtgcatcatagtcttgcgttgaggtttgccctagcacacctccccacatagctagattatcatgcacatgact |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
11542744 |
ctacaacttgtgacatagttatcttttgtgcatcatagttttgtgttgaggtttgccctagcacacctccccacgtagctagattaccatgcacatgact |
11542645 |
T |
|
| Q |
316 |
tgagcattcatagtctcttgaaaatgattttatagacttaagagcttgctcaaactccagtcgtgatatctttttctccatgtaacttgcaagaaggcta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542644 |
tgagcattcatagtctcttgaaaatgattttatagacttaagagcttgctcaaactccggtcgtgatatctttttctccatgtaacttgcaagaaggcta |
11542545 |
T |
|
| Q |
416 |
gacattttctcacactgaaagtcataaccaaattcacaaatataattaggtatttatgcatggataaaaacgtaattaagaactatgttattgatataga |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542544 |
gacattttctcacactgaaagtcataaccaaattcacaaatataattaggtatttatgcatggataaaaacgtaattaagaactatgttattgatataga |
11542445 |
T |
|
| Q |
516 |
tttaaaagagattaatcaaataaatgaattcactagcctcttgtttcagctgagcattttcttgcttca |
584 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542444 |
tttaaaagagattaatcaaataaatgaattcactagcctcttgtttcagctgagcattttcttgcttca |
11542376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 11556767 - 11556336
Alignment:
| Q |
17 |
tctatgccactaatcttcactaatccagaatatttggaagattcttcacacacattcgcacctttaaagtgattgttcttgggaaaaacttgctcataac |
116 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11556767 |
tctatgccactaatcttcaccaatcctgaatatttggaagattcttcgcacacatatgcacctttaaaatgattgttcttgggaaaaacttgctcataat |
11556668 |
T |
|
| Q |
117 |
tttcgcgatgaagagtgtacccatcttgaatatttggagatttgacccaaaaaggctcattaactctcacaagcctaaccaattcatccattgcagcatc |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11556667 |
tttcacgatgaagagtgtacccatcttgagtatttgaaggtttgacccaaaaaggctcatcaactctcacaagcctaaccaattcatccattgcagcatc |
11556568 |
T |
|
| Q |
217 |
tacaacttgtgacatagttatcttttgtgcatcatagtcttgcgttgaggtttgccctagcacacctccccacatagctagattatcatgcacatgactt |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| | |||| ||||||| |
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| T |
11556567 |
tacaacttgagacatagttatcttttgtgcatcatagttttgtgttgaggtttgccctagcacacctccccacataactagattaccttgcatatgactt |
11556468 |
T |
|
| Q |
317 |
gagcattcatagtctcttgaaaatgattttatagacttaagagcttgctcaaactccagtcgtgatatctttttctccatgtaacttgcaagaaggctag |
416 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556467 |
gagcattcatagtctcttggaaatgattttatagacttaagagcttgctcaaattccggtcgtgatatctttttctccatgtaacttgcaagaaggctag |
11556368 |
T |
|
| Q |
417 |
acattttctcacactgaaagtcataaccaaat |
448 |
Q |
| |
|
||| ||||||||||||||||| |||||||||| |
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| T |
11556367 |
acactttctcacactgaaagttataaccaaat |
11556336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 22824492 - 22824682
Alignment:
| Q |
17 |
tctatgccactaatcttcactaatccagaatatttggaagattcttcacacacattcgcacctttaaagtgattgttcttgggaaaaacttgctcataac |
116 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||||||| ||||| | |||||||||||| |||||||||||| ||||||||||||| |||| |
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| T |
22824492 |
tctatgccactaatcttcaccaaccctgaatatttggaagattcttcgcacacgtacgcacctttaaaatgattgttcttgagaaaaacttgctcgtaac |
22824591 |
T |
|
| Q |
117 |
tttcgcgatgaagagtgtacccatcttgaatatttggagatttgacccaaaaaggctcattaactctcacaagcctaaccaattcatccat |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22824592 |
tttcacgatgaagagtgtacccatcttgactatttgaaggtttgccccaaaaaggctcattaactctcacaagcctaaccaattcatccat |
22824682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 517 - 591
Target Start/End: Complemental strand, 11556304 - 11556230
Alignment:
| Q |
517 |
ttaaaagagattaatcaaataaatgaattcactagcctcttgtttcagctgagcattttcttgcttcatctcctg |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556304 |
ttaaaagagattaatcaaataaatgaattcactagcctcttgtttcagctgagcattttcttgcttcatctcctg |
11556230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Original strand, 22824706 - 22824749
Alignment:
| Q |
328 |
gtctcttgaaaatgattttatagacttaagagcttgctcaaact |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22824706 |
gtctcttgaaaatgattttatagacttaagagcttgctcaaact |
22824749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 120
Target Start/End: Complemental strand, 49126850 - 49126819
Alignment:
| Q |
89 |
ttgttcttgggaaaaacttgctcataactttc |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
49126850 |
ttgttcttgggaaaaacttgctcataactttc |
49126819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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