View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_high_11 (Length: 260)
Name: NF0952_high_11
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 11379590 - 11379800
Alignment:
| Q |
31 |
tttccaccagcattatttaatgcatataacacttcattctttattcctaaagctggttttccagttatcaatctcaacaaaacaattccaaatgaataaa |
130 |
Q |
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| T |
11379590 |
tttccaccagcattatttaatgcatataacacttcattctttattcctaaagctggttttccagttatcaatctcaacaaaacaattccaaatgaataaa |
11379689 |
T |
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| Q |
131 |
catctgactttgaagtaagttcgcctgtacccaagaattctggatccatgtatgcaaaagttccctttgcaaaactagtgatccaaaactgtgtagtact |
230 |
Q |
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| T |
11379690 |
catctgactttgaagtaagttcgcctgtacccaagaattccggatccatgtatgcaaaagttccctttgcaaaactagtgatccaaaactgtgtagtact |
11379789 |
T |
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| Q |
231 |
attgttactag |
241 |
Q |
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| T |
11379790 |
attgttactag |
11379800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 29363028 - 29362944
Alignment:
| Q |
115 |
attccaaatgaataaacatctgactttgaagtaagttcgcctgtacccaagaattctggatccatgtatgcaaaagttccctttg |
199 |
Q |
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| T |
29363028 |
attccaaaagaataaacatctgatttcggagtgagttcaccggaagcaaggaattcaggatccatgtagacaaaagttccctttg |
29362944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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