View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0952_high_2 (Length: 423)
Name: NF0952_high_2
Description: NF0952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0952_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 71 - 414
Target Start/End: Original strand, 29071206 - 29071549
Alignment:
| Q |
71 |
gattatcatttaaaagtttgagttttctcctttaaaaatcaccagaggagctaaaaccttaaatatgagtcatatatcaaatttatttactttcttatgt |
170 |
Q |
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| T |
29071206 |
gattatcatttaaaagtttgaattttctcctttaaaaatcaccagaggagctaaaaccttaaatatgagtcatatatcaaatttatttactttcttatgt |
29071305 |
T |
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| Q |
171 |
caaatattatggtcacctcacttacgttaaaatttgcaatagaaaaattgttgtcgttttccccttcttttgtcaatgaccttttggttggggcattatc |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29071306 |
caaatattatggtcacctcacttacgttaaaatttgcaatagaaaaattgttgtcgttttccccttcttttgtcaatgaccttttggttggggcattatc |
29071405 |
T |
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| Q |
271 |
aagagcaaaataattaagatcagaaacaaaaacaatagagcaagtaagtattgataccattttttccatgcacatgcaacctgatcaggtccacataatt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29071406 |
aagagcaaaataattaagatcagaaacaaaaacaatagagcaagtaagtattggtaccattttttccatgcacatgcaacctgatcaggtccacataatt |
29071505 |
T |
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| Q |
371 |
aagacgtgacctagaattctacaaacgataccatgtgtctgtgc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29071506 |
aagacgtgacctagaattctacaaacgataccatgtgtctgtgc |
29071549 |
T |
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